Difference between revisions of "TSS:Hg 232206.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |CAVB2= | ||
| + | |MYSB= | ||
|all_trans=NM_001167945:-31 NM_201571:-31 NM_201572:-31 AK307526:-31 AK293837:37 ENST00000467034.1:-52 uc057sby.1:-52 AK311694:-52 AK296471:-74 ENST00000468177.1:-97 uc057sbx.1:-97 ENST00000352115.10:-107 ENST00000377328.5:-107 uc001ips.3:-107 uc009xjz.2:-107 AF423191:-107 AY393860:-107 AY675091:-107 AF137376:-108 KJ896530:-109 ENST00000282343.12:114 uc001ipu.4:114 BC136409:-130 ENST00000324631.11:-167 NM_201596:-167 NM_201593:-167 NM_201597:-167 uc001ipr.3:-167 S60415:-167 ENST00000377331.6:336 uc001ipv.4:336 AF423190:336 AY393858:336 AY393861:336 | |all_trans=NM_001167945:-31 NM_201571:-31 NM_201572:-31 AK307526:-31 AK293837:37 ENST00000467034.1:-52 uc057sby.1:-52 AK311694:-52 AK296471:-74 ENST00000468177.1:-97 uc057sbx.1:-97 ENST00000352115.10:-107 ENST00000377328.5:-107 uc001ips.3:-107 uc009xjz.2:-107 AF423191:-107 AY393860:-107 AY675091:-107 AF137376:-108 KJ896530:-109 ENST00000282343.12:114 uc001ipu.4:114 BC136409:-130 ENST00000324631.11:-167 NM_201596:-167 NM_201593:-167 NM_201597:-167 uc001ipr.3:-167 S60415:-167 ENST00000377331.6:336 uc001ipv.4:336 AF423190:336 AY393858:336 AY393861:336 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=420 |
| − | |end= | + | |end=18625707 |
| + | |end_of_center_position=18625705 | ||
|entrez_id=783 | |entrez_id=783 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=CACNLB2 | + | |gene_alias=CACNLB2{{!}}CAVB2{{!}}MYSB |
|gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | |gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | ||
|gene_id=783 | |gene_id=783 | ||
| − | |gene_name= | + | |gene_name=CACNB2 |
|gene_source=HGNC:1402 | |gene_source=HGNC:1402 | ||
|gene_symbol=CACNB2 | |gene_symbol=CACNB2 | ||
| Line 18: | Line 21: | ||
|hgnc_mgi_id=HGNC:1402 | |hgnc_mgi_id=HGNC:1402 | ||
|nearest_ensembl=ENSG00000165995 | |nearest_ensembl=ENSG00000165995 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_201593 |
|nearest_refseq=NM_000724 | |nearest_refseq=NM_000724 | ||
|nearest_unigene=Hs.59093 | |nearest_unigene=Hs.59093 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=18625701 |
| + | |start_of_center_position=18625704 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name= |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_232206.1 | |tss_id=hg_232206.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q08289 | |uniprot_id=Q08289 | ||
}} | }} | ||
Latest revision as of 08:32, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 18625704 |
|---|---|
| End of the center position in the TSS region: | 18625705 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | NM_001167945:-31 NM_201571:-31 NM_201572:-31 AK307526:-31 AK293837:37 ENST00000467034.1:-52 uc057sby.1:-52 AK311694:-52 AK296471:-74 ENST00000468177.1:-97 uc057sbx.1:-97 ENST00000352115.10:-107 ENST00000377328.5:-107 uc001ips.3:-107 uc009xjz.2:-107 AF423191:-107 AY393860:-107 AY675091:-107 AF137376:-108 KJ896530:-109 ENST00000282343.12:114 uc001ipu.4:114 BC136409:-130 ENST00000324631.11:-167 NM_201596:-167 NM_201593:-167 NM_201597:-167 uc001ipr.3:-167 S60415:-167 ENST00000377331.6:336 uc001ipv.4:336 AF423190:336 AY393858:336 AY393861:336 |
TATA-Box annotation
| Distance to TSS: | 420 |
|---|---|
| Nearest PromoterID: | NM_201593 |
| Entrez ID: | 783 |
| Nearest Unigene: | Hs.59093 |
| Nearest Refseq: | NM_000724 |
| Nearest Ensembl: | ENSG00000165995 |
| Gene Name: | CACNB2 |
| Gene Alias: | CACNLB2|CAVB2|MYSB |
| Gene Description: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
