Difference between revisions of "TSS:Hg 232208.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |CAVB2= | ||
| + | |MYSB= | ||
|all_trans=NM_201570:33 AK299873:131 AK295113:136 ENST00000377315.4:262 uc001iqa.3:262 AK293937:472 AF423192:481 | |all_trans=NM_201570:33 AK299873:131 AK295113:136 ENST00000377315.4:262 uc001iqa.3:262 AK293937:472 AF423192:481 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss=- | + | |distance_to_tss=-24 |
| − | |end= | + | |end=21125191 |
| + | |end_of_center_position=21125190 | ||
|entrez_id=783 | |entrez_id=783 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| − | |gene_alias=CACNLB2 | + | |gene_alias=CACNLB2{{!}}CAVB2{{!}}MYSB |
|gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | |gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | ||
|gene_id=783 | |gene_id=783 | ||
| − | |gene_name= | + | |gene_name=CACNB2 |
|gene_source=HGNC:1402 | |gene_source=HGNC:1402 | ||
|gene_symbol=CACNB2 | |gene_symbol=CACNB2 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_000724 | |nearest_refseq=NM_000724 | ||
|nearest_unigene=Hs.59093 | |nearest_unigene=Hs.59093 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=21125188 |
| + | |start_of_center_position=21125189 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name= |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_232208.1 | |tss_id=hg_232208.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q5VVH1 | |uniprot_id=Q5VVH1 | ||
}} | }} | ||
Latest revision as of 08:32, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 21125189 |
|---|---|
| End of the center position in the TSS region: | 21125190 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | NM_201570:33 AK299873:131 AK295113:136 ENST00000377315.4:262 uc001iqa.3:262 AK293937:472 AF423192:481 |
TATA-Box annotation
| Distance to TSS: | -24 |
|---|---|
| Nearest PromoterID: | NM_201570 |
| Entrez ID: | 783 |
| Nearest Unigene: | Hs.59093 |
| Nearest Refseq: | NM_000724 |
| Nearest Ensembl: | ENSG00000165995 |
| Gene Name: | CACNB2 |
| Gene Alias: | CACNLB2|CAVB2|MYSB |
| Gene Description: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
