Difference between revisions of "TSS:Hg 232214.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |KU-CT-1= | ||
|all_trans=ENST00000496741.5:3 ENST00000484642.5:3 uc057sgi.1:3 uc057sgj.1:3 AK302104:3 AK057389:7 ENST00000409049.7:-10 uc031vzq.2:-10 AY436643:-10 ENST00000447081.5:11 ENST00000468003.5:11 uc057sgk.1:11 uc057sgl.1:11 ENST00000483596.5:12 uc057sgm.1:12 ENST00000409983.7:-37 uc010qcv.4:-37 AK302985:-37 BC039312:-43 ENST00000298032.9:-50 ENST00000376528.8:-50 NM_001282746:-50 NM_001282745:-50 NM_001282747:-50 NM_173081:-50 uc001irm.6:-50 uc010qcw.3:-50 | |all_trans=ENST00000496741.5:3 ENST00000484642.5:3 uc057sgi.1:3 uc057sgj.1:3 AK302104:3 AK057389:7 ENST00000409049.7:-10 uc031vzq.2:-10 AY436643:-10 ENST00000447081.5:11 ENST00000468003.5:11 uc057sgk.1:11 uc057sgl.1:11 ENST00000483596.5:12 uc057sgm.1:12 ENST00000409983.7:-37 uc010qcv.4:-37 AK302985:-37 BC039312:-43 ENST00000298032.9:-50 ENST00000376528.8:-50 NM_001282746:-50 NM_001282745:-50 NM_001282747:-50 NM_173081:-50 uc001irm.6:-50 uc010qcw.3:-50 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=21 |
| − | |end= | + | |end=23236251 |
| + | |end_of_center_position=23236250 | ||
|entrez_id=219681 | |entrez_id=219681 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=CT81 | + | |gene_alias=CT81{{!}}KU-CT-1 |
|gene_description=armadillo repeat containing 3 | |gene_description=armadillo repeat containing 3 | ||
|gene_id=219681 | |gene_id=219681 | ||
| − | |gene_name= | + | |gene_name=ARMC3 |
|gene_source=HGNC:30964 | |gene_source=HGNC:30964 | ||
|gene_symbol=ARMC3 | |gene_symbol=ARMC3 | ||
| Line 18: | Line 20: | ||
|hgnc_mgi_id=HGNC:30964 | |hgnc_mgi_id=HGNC:30964 | ||
|nearest_ensembl=ENSG00000165309 | |nearest_ensembl=ENSG00000165309 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282745 |
|nearest_refseq=NM_173081 | |nearest_refseq=NM_173081 | ||
|nearest_unigene=Hs.659807 | |nearest_unigene=Hs.659807 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=23236247 |
| + | |start_of_center_position=23236249 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name= |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_232214.1 | |tss_id=hg_232214.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 08:32, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 23236249 |
|---|---|
| End of the center position in the TSS region: | 23236250 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000496741.5:3 ENST00000484642.5:3 uc057sgi.1:3 uc057sgj.1:3 AK302104:3 AK057389:7 ENST00000409049.7:-10 uc031vzq.2:-10 AY436643:-10 ENST00000447081.5:11 ENST00000468003.5:11 uc057sgk.1:11 uc057sgl.1:11 ENST00000483596.5:12 uc057sgm.1:12 ENST00000409983.7:-37 uc010qcv.4:-37 AK302985:-37 BC039312:-43 ENST00000298032.9:-50 ENST00000376528.8:-50 NM_001282746:-50 NM_001282745:-50 NM_001282747:-50 NM_173081:-50 uc001irm.6:-50 uc010qcw.3:-50 |
TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_001282745 |
| Entrez ID: | 219681 |
| Nearest Unigene: | Hs.659807 |
| Nearest Refseq: | NM_173081 |
| Nearest Ensembl: | ENSG00000165309 |
| Gene Name: | ARMC3 |
| Gene Alias: | CT81|KU-CT-1 |
| Gene Description: | armadillo repeat containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
