Difference between revisions of "TSS:Hg 232251.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |BioT2-A= | ||
| + | |BioT2-B= | ||
| + | |BioT2-C= | ||
| + | |C10orf68= | ||
|all_trans=ENST00000375025.8:-16 NM_024688:-16 uc001iwn.5:-16 AK023093:-16 ENST00000375030.6:97 ENST00000375028.6:97 uc001iwm.2:97 uc001iwl.2:97 BC125090:97 BC125091:97 | |all_trans=ENST00000375025.8:-16 NM_024688:-16 uc001iwn.5:-16 AK023093:-16 ENST00000375030.6:97 ENST00000375028.6:97 uc001iwm.2:97 uc001iwl.2:97 BC125090:97 BC125091:97 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=121599 |
| − | |end= | + | |end=32932553 |
| + | |end_of_center_position=32932549 | ||
|entrez_id=79741 | |entrez_id=79741 | ||
|gc_percent=0.318408 | |gc_percent=0.318408 | ||
| − | |gene_alias=BIOT2 | + | |gene_alias=BIOT2{{!}}BioT2-A{{!}}BioT2-B{{!}}BioT2-C{{!}}C10orf68 |
|gene_description=coiled-coil domain containing 7 | |gene_description=coiled-coil domain containing 7 | ||
|gene_id=79741 | |gene_id=79741 | ||
| − | |gene_name= | + | |gene_name=CCDC7 |
|gene_source=HGNC:26533 | |gene_source=HGNC:26533 | ||
|gene_symbol=CCDC7 | |gene_symbol=CCDC7 | ||
| Line 17: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:26533 | |hgnc_mgi_id=HGNC:26533 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000216937 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001321115 |
|nearest_refseq=NM_024688 | |nearest_refseq=NM_024688 | ||
|nearest_unigene=Hs.585464 | |nearest_unigene=Hs.585464 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=32932543 |
| + | |start_of_center_position=32932548 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name= |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232251.1 | |tss_id=hg_232251.1 | ||
Latest revision as of 08:33, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32932548 |
|---|---|
| End of the center position in the TSS region: | 32932549 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000375025.8:-16 NM_024688:-16 uc001iwn.5:-16 AK023093:-16 ENST00000375030.6:97 ENST00000375028.6:97 uc001iwm.2:97 uc001iwl.2:97 BC125090:97 BC125091:97 |
TATA-Box annotation
| Distance to TSS: | 121599 |
|---|---|
| Nearest PromoterID: | NM_001321115 |
| Entrez ID: | 79741 |
| Nearest Unigene: | Hs.585464 |
| Nearest Refseq: | NM_024688 |
| Nearest Ensembl: | ENSG00000216937 |
| Gene Name: | CCDC7 |
| Gene Alias: | BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 |
| Gene Description: | coiled-coil domain containing 7 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.318408 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
