Difference between revisions of "TSS:Hg 232272.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |CDHR16= | ||
| + | |HSCR1= | ||
| + | |MEN2A= | ||
| + | |MEN2B= | ||
| + | |MTC1= | ||
| + | |PTC= | ||
| + | |RET-ELE1= | ||
| + | |RET51= | ||
|all_trans=AK294827:69 ENST00000479913.1:-115 uc057svy.1:-115 | |all_trans=AK294827:69 ENST00000479913.1:-115 uc057svy.1:-115 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=115 |
| − | |end= | + | |end=43409160 |
| + | |end_of_center_position=43409154 | ||
|entrez_id=5979 | |entrez_id=5979 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=CDHF12 | + | |gene_alias=CDHF12{{!}}CDHR16{{!}}HSCR1{{!}}MEN2A{{!}}MEN2B{{!}}MTC1{{!}}PTC{{!}}RET-ELE1 |
|gene_description=ret proto-oncogene | |gene_description=ret proto-oncogene | ||
|gene_id=5979 | |gene_id=5979 | ||
| − | |gene_name= | + | |gene_name=RET |
|gene_source=HGNC:9967 | |gene_source=HGNC:9967 | ||
|gene_symbol=RET | |gene_symbol=RET | ||
| Line 18: | Line 27: | ||
|hgnc_mgi_id=HGNC:9967 | |hgnc_mgi_id=HGNC:9967 | ||
|nearest_ensembl=ENSG00000165731 | |nearest_ensembl=ENSG00000165731 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001355216 |
|nearest_refseq=NM_000323 | |nearest_refseq=NM_000323 | ||
|nearest_unigene=Hs.350321 | |nearest_unigene=Hs.350321 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=43409146 |
| + | |start_of_center_position=43409153 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name= |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232272.1 | |tss_id=hg_232272.1 | ||
Latest revision as of 08:33, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 43409153 |
|---|---|
| End of the center position in the TSS region: | 43409154 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | AK294827:69 ENST00000479913.1:-115 uc057svy.1:-115 |
TATA-Box annotation
| Distance to TSS: | 115 |
|---|---|
| Nearest PromoterID: | NM_001355216 |
| Entrez ID: | 5979 |
| Nearest Unigene: | Hs.350321 |
| Nearest Refseq: | NM_000323 |
| Nearest Ensembl: | ENSG00000165731 |
| Gene Name: | RET |
| Gene Alias: | CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 |
| Gene Description: | ret proto-oncogene |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
