Difference between revisions of "TSS:Hg 232364.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |USH1D= | ||
|all_trans=NM_001171936:-142 NM_001171935:-142 AY563161:-142 AY563162:-142 | |all_trans=NM_001171936:-142 NM_001171935:-142 AY563161:-142 AY563162:-142 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=142 | |distance_to_tss=142 | ||
| − | |end= | + | |end=72273956 |
| + | |end_of_center_position=72273950 | ||
|entrez_id=64072 | |entrez_id=64072 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=CDHR23 | + | |gene_alias=CDHR23{{!}}PITA5{{!}}USH1D |
|gene_description=cadherin related 23 | |gene_description=cadherin related 23 | ||
|gene_id=64072 | |gene_id=64072 | ||
| − | |gene_name= | + | |gene_name=CDH23 |
|gene_source=HGNC:13733 | |gene_source=HGNC:13733 | ||
|gene_symbol=CDH23 | |gene_symbol=CDH23 | ||
| Line 21: | Line 23: | ||
|nearest_refseq=NM_022124 | |nearest_refseq=NM_022124 | ||
|nearest_unigene=Hs.656032 | |nearest_unigene=Hs.656032 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=72273943 |
| − | |strand= | + | |start_of_center_position=72273949 |
| − | |transcript_name= | + | |strand=- |
| − | |tss_classification= | + | |transcript_name= |
| + | |tss_classification=yes | ||
|tss_id=hg_232364.1 | |tss_id=hg_232364.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q9H251 | |uniprot_id=Q9H251 | ||
}} | }} | ||
Latest revision as of 08:35, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 72273949 |
|---|---|
| End of the center position in the TSS region: | 72273950 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | NM_001171936:-142 NM_001171935:-142 AY563161:-142 AY563162:-142 |
TATA-Box annotation
| Distance to TSS: | 142 |
|---|---|
| Nearest PromoterID: | NM_001171936 |
| Entrez ID: | 64072 |
| Nearest Unigene: | Hs.656032 |
| Nearest Refseq: | NM_022124 |
| Nearest Ensembl: | ENSG00000107736 |
| Gene Name: | CDH23 |
| Gene Alias: | CDHR23|PITA5|USH1D |
| Gene Description: | cadherin related 23 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
