Difference between revisions of "TSS:Hg 232388.1"
From referenceTSS
| Line 5: | Line 5: | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=31061 | |distance_to_tss=31061 | ||
| − | |end= | + | |end=75210859 |
|end_of_center_position=75210855 | |end_of_center_position=75210855 | ||
|entrez_id=26985 | |entrez_id=26985 | ||
| Line 24: | Line 24: | ||
|num_trans=24 | |num_trans=24 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=75210850 |
|start_of_center_position=75210854 | |start_of_center_position=75210854 | ||
|strand=+ | |strand=+ | ||
|tata_box=60(GCCTTTAAAGTA,+,0.00) | |tata_box=60(GCCTTTAAAGTA,+,0.00) | ||
|transcript_name=ENST00000498394.5 | |transcript_name=ENST00000498394.5 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_232388.1 | |tss_id=hg_232388.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 08:36, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 75210854 |
|---|---|
| End of the center position in the TSS region: | 75210855 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000498394.5 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | ENST00000498394.5:0 ENST00000313132.8:-3 L08666:-3 BC012883:-4 ENST00000468285.1:5 AK296635:-16 AK315919:-22 BC072407:-36 ENST00000481876.5:-37 LF333488:37 MA569065:37 ENST00000475142.5:-38 BC000165:-46 ENST00000470745.5:-47 ENST00000472137.5:-76 ENST00000332211.10:-100 ENST00000447677.5:175 ENST00000344036.8:-206 L06328:286 CU687220:299 KJ892371:299 GQ891299:300 LF384970:-309 MA620547:-309 |
TATA-Box annotation
| Distance to TSS: | 31061 |
|---|---|
| Nearest PromoterID: | NM_001320264 |
| Entrez ID: | 26985 |
| Nearest Unigene: | Hs.500104 |
| Nearest Refseq: | NM_012095 |
| Nearest Ensembl: | ENSG00000185009 |
| Gene Name: | voltage dependent anion channel 2 |
| Gene Alias: | - |
| Gene Description: | adaptor related protein complex 3 subunit mu 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.363184 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 60(GCCTTTAAAGTA,+,0.00) |
