Difference between revisions of "TSS:Hg 232405.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |S24= | ||
|all_trans=ENST00000485708.6:28 uc057ukd.1:28 ENST00000478655.5:47 uc057uke.1:47 D28424:47 AK311776:47 AK311910:47 ENST00000372360.7:49 uc001jzq.4:49 BX537975:49 M31520:49 ENST00000613865.4:-56 ENST00000435275.5:-56 ENST00000440692.5:-56 NM_001026:-56 NM_033022:-56 NM_001142285:-56 NM_001142284:-56 NM_001142283:-56 NM_001142282:-56 uc057ukb.1:-56 uc057ukc.1:-56 uc001jzs.4:-56 ENST00000464716.5:58 uc057ukf.1:58 BX647260:58 ENST00000476545.5:62 uc057ukg.1:62 BC071926:62 AF147330:63 ENST00000360830.8:67 uc001jzp.4:67 BC000523:67 ENST00000466129.5:70 uc057ukh.1:70 BC003149:71 ENST00000475468.5:88 uc057uki.1:88 ENST00000482069.5:101 uc057ukj.1:101 | |all_trans=ENST00000485708.6:28 uc057ukd.1:28 ENST00000478655.5:47 uc057uke.1:47 D28424:47 AK311776:47 AK311910:47 ENST00000372360.7:49 uc001jzq.4:49 BX537975:49 M31520:49 ENST00000613865.4:-56 ENST00000435275.5:-56 ENST00000440692.5:-56 NM_001026:-56 NM_033022:-56 NM_001142285:-56 NM_001142284:-56 NM_001142283:-56 NM_001142282:-56 uc057ukb.1:-56 uc057ukc.1:-56 uc001jzs.4:-56 ENST00000464716.5:58 uc057ukf.1:58 BX647260:58 ENST00000476545.5:62 uc057ukg.1:62 BC071926:62 AF147330:63 ENST00000360830.8:67 uc001jzp.4:67 BC000523:67 ENST00000466129.5:70 uc057ukh.1:70 BC003149:71 ENST00000475468.5:88 uc057uki.1:88 ENST00000482069.5:101 uc057ukj.1:101 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=-47 |
| − | |end= | + | |end=78037302 |
| + | |end_of_center_position=78037298 | ||
|entrez_id=6229 | |entrez_id=6229 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=DBA3 | + | |gene_alias=DBA3{{!}}S24{{!}}eS24 |
|gene_description=ribosomal protein S24 | |gene_description=ribosomal protein S24 | ||
|gene_id=6229 | |gene_id=6229 | ||
| − | |gene_name= | + | |gene_name=RPS24 |
|gene_source=HGNC:10411 | |gene_source=HGNC:10411 | ||
|gene_symbol=RPS24 | |gene_symbol=RPS24 | ||
| Line 18: | Line 20: | ||
|hgnc_mgi_id=HGNC:10411 | |hgnc_mgi_id=HGNC:10411 | ||
|nearest_ensembl=ENSG00000138326 | |nearest_ensembl=ENSG00000138326 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001142285 |
|nearest_refseq=NM_001026 | |nearest_refseq=NM_001026 | ||
|nearest_unigene=Hs.280130 | |nearest_unigene=Hs.280130 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=78037293 |
| − | |strand= | + | |start_of_center_position=78037297 |
| − | |transcript_name= | + | |strand=- |
| − | |tss_classification= | + | |transcript_name= |
| + | |tss_classification=no | ||
|tss_id=hg_232405.1 | |tss_id=hg_232405.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 08:36, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 78037297 |
|---|---|
| End of the center position in the TSS region: | 78037298 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000485708.6:28 uc057ukd.1:28 ENST00000478655.5:47 uc057uke.1:47 D28424:47 AK311776:47 AK311910:47 ENST00000372360.7:49 uc001jzq.4:49 BX537975:49 M31520:49 ENST00000613865.4:-56 ENST00000435275.5:-56 ENST00000440692.5:-56 NM_001026:-56 NM_033022:-56 NM_001142285:-56 NM_001142284:-56 NM_001142283:-56 NM_001142282:-56 uc057ukb.1:-56 uc057ukc.1:-56 uc001jzs.4:-56 ENST00000464716.5:58 uc057ukf.1:58 BX647260:58 ENST00000476545.5:62 uc057ukg.1:62 BC071926:62 AF147330:63 ENST00000360830.8:67 uc001jzp.4:67 BC000523:67 ENST00000466129.5:70 uc057ukh.1:70 BC003149:71 ENST00000475468.5:88 uc057uki.1:88 ENST00000482069.5:101 uc057ukj.1:101 |
TATA-Box annotation
| Distance to TSS: | -47 |
|---|---|
| Nearest PromoterID: | NM_001142285 |
| Entrez ID: | 6229 |
| Nearest Unigene: | Hs.280130 |
| Nearest Refseq: | NM_001026 |
| Nearest Ensembl: | ENSG00000138326 |
| Gene Name: | RPS24 |
| Gene Alias: | DBA3|S24|eS24 |
| Gene Description: | ribosomal protein S24 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
