Difference between revisions of "TSS:Hg 232406.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000485708.6:6 uc057ukd.1:6 ENST00000478655.5:25 uc057uke.1:25 D28424:25 AK311776:25 AK311910:25 ENST00000372360.7:27 uc001jzq.4:27 BX537975:27 M31...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |S24= |
| + | |all_trans=MN309186:-25 MN309187:-25 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance= | + | |distance=-25 |
| − | |distance_to_tss= | + | |distance_to_tss=-26 |
| − | |end= | + | |end=78040652 |
| + | |end_of_center_position=78040646 | ||
|entrez_id=6229 | |entrez_id=6229 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=DBA3 | + | |gene_alias=DBA3{{!}}S24{{!}}eS24 |
|gene_description=ribosomal protein S24 | |gene_description=ribosomal protein S24 | ||
|gene_id=6229 | |gene_id=6229 | ||
| − | |gene_name= | + | |gene_name=RPS24 |
|gene_source=HGNC:10411 | |gene_source=HGNC:10411 | ||
|gene_symbol=RPS24 | |gene_symbol=RPS24 | ||
| Line 18: | Line 20: | ||
|hgnc_mgi_id=HGNC:10411 | |hgnc_mgi_id=HGNC:10411 | ||
|nearest_ensembl=ENSG00000138326 | |nearest_ensembl=ENSG00000138326 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001142285 |
|nearest_refseq=NM_001026 | |nearest_refseq=NM_001026 | ||
|nearest_unigene=Hs.280130 | |nearest_unigene=Hs.280130 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
| − | |start= | + | |start=78040639 |
| − | |strand= | + | |start_of_center_position=78040645 |
| − | |transcript_name= | + | |strand=- |
| − | |tss_classification= | + | |transcript_name=MN309186 MN309187 |
| + | |tss_classification=no | ||
|tss_id=hg_232406.1 | |tss_id=hg_232406.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 08:36, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 78040645 |
|---|---|
| End of the center position in the TSS region: | 78040646 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | MN309186 MN309187 |
|---|---|
| Distance: | -25 |
| Num_trans: | 2 |
| All_trans: | MN309186:-25 MN309187:-25 |
TATA-Box annotation
| Distance to TSS: | -26 |
|---|---|
| Nearest PromoterID: | NM_001142285 |
| Entrez ID: | 6229 |
| Nearest Unigene: | Hs.280130 |
| Nearest Refseq: | NM_001026 |
| Nearest Ensembl: | ENSG00000138326 |
| Gene Name: | RPS24 |
| Gene Alias: | DBA3|S24|eS24 |
| Gene Description: | ribosomal protein S24 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
