Difference between revisions of "TSS:Hg 232810.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=NM_005957:160 ENST00000376590.7:205 uc001atc.3:205 AK312907:299 ENST00000418034.1:327 uc057chq.1:327 AY046564:327 BC053509:338 | |all_trans=NM_005957:160 ENST00000376590.7:205 uc001atc.3:205 AK312907:299 ENST00000418034.1:327 uc057chq.1:327 AY046564:327 BC053509:338 | ||
| − | |chr= | + | |chr=chr11 |
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=75 |
| − | |end= | + | |end=1840552 |
|end_of_center_position=1840548 | |end_of_center_position=1840548 | ||
| − | |entrez_id= | + | |entrez_id=1185 |
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias=- | + | |gene_alias=CLC-6 |
| − | |gene_description= | + | |gene_description=chloride voltage-gated channel 6 |
|gene_id=4524 | |gene_id=4524 | ||
| − | |gene_name= | + | |gene_name=CLCN6 |
|gene_source=HGNC:7436 | |gene_source=HGNC:7436 | ||
|gene_symbol=MTHFR | |gene_symbol=MTHFR | ||
| Line 18: | Line 18: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:7436 | |hgnc_mgi_id=HGNC:7436 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000011021 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001286 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_001286 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.193043 |
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=1840543 |
|start_of_center_position=1840547 | |start_of_center_position=1840547 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name= |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_232810.1 | |tss_id=hg_232810.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q8IU67 | |uniprot_id=Q8IU67 | ||
}} | }} | ||
Latest revision as of 08:46, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 1840547 |
|---|---|
| End of the center position in the TSS region: | 1840548 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | NM_005957:160 ENST00000376590.7:205 uc001atc.3:205 AK312907:299 ENST00000418034.1:327 uc057chq.1:327 AY046564:327 BC053509:338 |
TATA-Box annotation
| Distance to TSS: | 75 |
|---|---|
| Nearest PromoterID: | NM_001286 |
| Entrez ID: | 1185 |
| Nearest Unigene: | Hs.193043 |
| Nearest Refseq: | NM_001286 |
| Nearest Ensembl: | ENSG00000011021 |
| Gene Name: | CLCN6 |
| Gene Alias: | CLC-6 |
| Gene Description: | chloride voltage-gated channel 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
