Difference between revisions of "TSS:Hg 233746.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |PAX7B= | ||
| + | |RMS2= | ||
|all_trans=ENST00000375375.7:-147 NM_013945:-147 NM_001135254:-147 NM_002584:-147 uc001bay.3:-147 X96743:-147 Z35141:349 ENST00000420770.6:368 uc010oct.3:368 DQ322591:368 ENST00000400661.3:371 uc001baz.4:371 BC121165:371 BC121166:371 KJ897296:451 | |all_trans=ENST00000375375.7:-147 NM_013945:-147 NM_001135254:-147 NM_002584:-147 uc001bay.3:-147 X96743:-147 Z35141:349 ENST00000420770.6:368 uc010oct.3:368 DQ322591:368 ENST00000400661.3:371 uc001baz.4:371 BC121165:371 BC121166:371 KJ897296:451 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=307 |
| − | |end= | + | |end=19368493 |
| + | |end_of_center_position=19368483 | ||
|entrez_id=5081 | |entrez_id=5081 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=HUP1 | + | |gene_alias=HUP1{{!}}PAX7B{{!}}RMS2 |
|gene_description=paired box 7 | |gene_description=paired box 7 | ||
|gene_id=5081 | |gene_id=5081 | ||
| − | |gene_name= | + | |gene_name=PAX7 |
|gene_source=HGNC:8621 | |gene_source=HGNC:8621 | ||
|gene_symbol=PAX7 | |gene_symbol=PAX7 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_002584 | |nearest_refseq=NM_002584 | ||
|nearest_unigene=Hs.113253 | |nearest_unigene=Hs.113253 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=19368472 |
| + | |start_of_center_position=19368482 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name= |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_233746.1 | |tss_id=hg_233746.1 | ||
Latest revision as of 09:07, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19368482 |
|---|---|
| End of the center position in the TSS region: | 19368483 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000375375.7:-147 NM_013945:-147 NM_001135254:-147 NM_002584:-147 uc001bay.3:-147 X96743:-147 Z35141:349 ENST00000420770.6:368 uc010oct.3:368 DQ322591:368 ENST00000400661.3:371 uc001baz.4:371 BC121165:371 BC121166:371 KJ897296:451 |
TATA-Box annotation
| Distance to TSS: | 307 |
|---|---|
| Nearest PromoterID: | NM_002584 |
| Entrez ID: | 5081 |
| Nearest Unigene: | Hs.113253 |
| Nearest Refseq: | NM_002584 |
| Nearest Ensembl: | ENSG00000009709 |
| Gene Name: | PAX7 |
| Gene Alias: | HUP1|PAX7B|RMS2 |
| Gene Description: | paired box 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
