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Difference between revisions of "TSS:Hg 235229.1"

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Line 3: Line 3:
 
|U5DS=
 
|U5DS=
 
|all_trans=ENST00000554558.6:133 ENST00000412224.6:138 AK124927:138 ENST00000663990.1:144 ENST00000535211.1:152 NR_027123:156 JX046911:156 JX628584:156 ENST00000335142.5:174 BX248296:174
 
|all_trans=ENST00000554558.6:133 ENST00000412224.6:138 AK124927:138 ENST00000663990.1:144 ENST00000535211.1:152 NR_027123:156 JX046911:156 JX628584:156 ENST00000335142.5:174 BX248296:174
|chr=chr1
+
|chr=chr14
 
|cpg_percent=0.035
 
|cpg_percent=0.035
 
|distance=133
 
|distance=133
 
|distance_to_tss=-3
 
|distance_to_tss=-3
|end=44731175
+
|end=55580263
 
|end_of_center_position=55580256
 
|end_of_center_position=55580256
 
|entrez_id=26830
 
|entrez_id=26830
Line 26: Line 26:
 
|num_trans=10
 
|num_trans=10
 
|species=human
 
|species=human
|start=44731166
+
|start=55580247
 
|start_of_center_position=55580255
 
|start_of_center_position=55580255
 
|strand=-
 
|strand=-
 
|transcript_name=ENST00000554558.6
 
|transcript_name=ENST00000554558.6
|tss_classification=no
+
|tss_classification=yes
 
|tss_id=hg_235229.1
 
|tss_id=hg_235229.1
 
|tss_score=1
 
|tss_score=1
 
|uniprot_id=
 
|uniprot_id=
 
}}
 
}}

Revision as of 09:41, 14 July 2021

Basic information about the TSS


TSS ID:hg_235229.1
Species:human
Chr:chr14
TSS Classification:yes
Start:55580247
End:55580263
Strand:-
TSS Score:1
Start of the center position in the TSS region:55580255
End of the center position in the TSS region:55580256



Gene and protein annotation


Transcript_name:ENST00000554558.6
Distance:133
GeneID:100129075
HGNC/MGI_ID:HGNC:19842
UniProt_ID:
Gene_name:KTN1 antisense RNA 1
Gene_symbol:KTN1-AS1
Gene_synonyms:MYCLo-3
Gene_source:HGNC:19842



Transcript annotation


Transcript_name:ENST00000554558.6
Distance:133
Num_trans:10
All_trans:ENST00000554558.6:133 ENST00000412224.6:138 AK124927:138 ENST00000663990.1:144 ENST00000535211.1:152 NR_027123:156 JX046911:156 JX628584:156 ENST00000335142.5:174 BX248296:174



TATA-Box annotation


Distance to TSS:-3
Nearest PromoterID:NR_002755
Entrez ID:26830
Nearest Unigene:
Nearest Refseq:NR_002755
Nearest Ensembl:ENSG00000200169
Gene Name:KTN1 antisense RNA 1
Gene Alias:RNU5D|U5DL|U5DS
Gene Description:RNA, U5D small nuclear 1
Gene Type:snRNA
CpG%:0.035
GC%:0.40796
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):