Difference between revisions of "TSS:Hg 238987.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=BC013858:-218 |
|chr=chr21 | |chr=chr21 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| − | |distance= | + | |distance=-218 |
|distance_to_tss=2 | |distance_to_tss=2 | ||
| − | |end= | + | |end=8442727 |
|end_of_center_position=8442727 | |end_of_center_position=8442727 | ||
| − | |entrez_id= | + | |entrez_id=109864273 |
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=RN18S1 | + | |gene_alias=RN18S1{{!}}RNA18S5 |
| − | |gene_description= | + | |gene_description=RNA, 18S pre-ribosomal N4 |
|gene_id=100008588 | |gene_id=100008588 | ||
| − | |gene_name= | + | |gene_name=RNA18SN4 |
|gene_source=HGNC:37657 | |gene_source=HGNC:37657 | ||
|gene_symbol=RNA18S5 | |gene_symbol=RNA18S5 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:37657 | |hgnc_mgi_id=HGNC:37657 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_146119 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_146119 |
|nearest_unigene= | |nearest_unigene= | ||
|num_trans=1 | |num_trans=1 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=8442725 |
|start_of_center_position=8442726 | |start_of_center_position=8442726 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC013858 |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_238987.1 | |tss_id=hg_238987.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 11:09, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 8442726 |
|---|---|
| End of the center position in the TSS region: | 8442727 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC013858 |
|---|---|
| Distance: | -218 |
| Num_trans: | 1 |
| All_trans: | BC013858:-218 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NR_146119 |
| Entrez ID: | 109864273 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_146119 |
| Nearest Ensembl: | |
| Gene Name: | RNA18SN4 |
| Gene Alias: | RN18S1|RNA18S5 |
| Gene Description: | RNA, 18S pre-ribosomal N4 |
| Gene Type: | rRNA |
| CpG%: | 0.115 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
