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Difference between revisions of "TSS:Hg 240852.1"

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Line 14: Line 14:
 
|distance=461
 
|distance=461
 
|distance_to_tss=25975
 
|distance_to_tss=25975
|end=144114747
+
|end=76213579
 
|end_of_center_position=76213576
 
|end_of_center_position=76213576
 
|entrez_id=2993
 
|entrez_id=2993
Line 33: Line 33:
 
|num_trans=3
 
|num_trans=3
 
|species=human
 
|species=human
|start=144114739
+
|start=76213571
 
|start_of_center_position=76213575
 
|start_of_center_position=76213575
 
|strand=+
 
|strand=+
 
|transcript_name=ENST00000510197.5 NM_001242936 AK124936
 
|transcript_name=ENST00000510197.5 NM_001242936 AK124936
|tss_classification=no
+
|tss_classification=yes
 
|tss_id=hg_240852.1
 
|tss_id=hg_240852.1
 
|tss_score=1
 
|tss_score=1
 
|uniprot_id=Q6ZV65
 
|uniprot_id=Q6ZV65
 
}}
 
}}

Revision as of 11:52, 14 July 2021

Basic information about the TSS


TSS ID:hg_240852.1
Species:human
Chr:chr4
TSS Classification:yes
Start:76213571
End:76213579
Strand:+
TSS Score:1
Start of the center position in the TSS region:76213575
End of the center position in the TSS region:76213576



Gene and protein annotation


Transcript_name:ENST00000510197.5 NM_001242936 AK124936
Distance:461
GeneID:100129583
HGNC/MGI_ID:HGNC:34343
UniProt_ID:Q6ZV65
Gene_name:family with sequence similarity 47 member E
Gene_symbol:FAM47E
Gene_synonyms:FLJ42946 LOC100129583
Gene_source:HGNC:34343



Transcript annotation


Transcript_name:ENST00000510197.5 NM_001242936 AK124936
Distance:461
Num_trans:3
All_trans:ENST00000510197.5:461 NM_001242936:461 AK124936:461



TATA-Box annotation


Distance to TSS:25975
Nearest PromoterID:NM_001308187
Entrez ID:2993
Nearest Unigene:Hs.434973
Nearest Refseq:NM_002099
Nearest Ensembl:ENSG00000170180
Gene Name:family with sequence similarity 47 member E
Gene Alias:CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2
Gene Description:glycophorin A (MNS blood group)
Gene Type:protein-coding
CpG%:0.005
GC%:0.333333
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):