Difference between revisions of "TSS:Hg 242698.1"
From referenceTSS
| Line 3: | Line 3: | ||
|HEL-S-69p= | |HEL-S-69p= | ||
|all_trans=AF240677:-63 D63481:-65 AB383767:-66 BC146321:-67 ENST00000320476.7:-70 ENST00000674084.1:-70 AY062238:-70 ENST00000377533.7:341 AF271734:341 LF214026:-420 MA449603:-420 ENST00000356994.7:-464 NM_015356:-464 NM_182706:-464 LF210317:-478 MA445894:-478 | |all_trans=AF240677:-63 D63481:-65 AB383767:-66 BC146321:-67 ENST00000320476.7:-70 ENST00000674084.1:-70 AY062238:-70 ENST00000377533.7:341 AF271734:341 LF214026:-420 MA449603:-420 ENST00000356994.7:-464 NM_015356:-464 NM_182706:-464 LF210317:-478 MA445894:-478 | ||
| − | |chr= | + | |chr=chr8 |
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=-63 | |distance=-63 | ||
|distance_to_tss=-32 | |distance_to_tss=-32 | ||
| − | |end= | + | |end=143815309 |
|end_of_center_position=143815309 | |end_of_center_position=143815309 | ||
|entrez_id=5478 | |entrez_id=5478 | ||
| Line 26: | Line 26: | ||
|num_trans=16 | |num_trans=16 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=143815308 |
|start_of_center_position=143815308 | |start_of_center_position=143815308 | ||
| − | |strand= | + | |strand=- |
|tata_box=-2(TGGTATAAAAGG,-,0.00) | |tata_box=-2(TGGTATAAAAGG,-,0.00) | ||
|transcript_name=AF240677 | |transcript_name=AF240677 | ||
Revision as of 12:33, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 143815308 |
|---|---|
| End of the center position in the TSS region: | 143815309 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF240677 |
|---|---|
| Distance: | -63 |
| Num_trans: | 16 |
| All_trans: | AF240677:-63 D63481:-65 AB383767:-66 BC146321:-67 ENST00000320476.7:-70 ENST00000674084.1:-70 AY062238:-70 ENST00000377533.7:341 AF271734:341 LF214026:-420 MA449603:-420 ENST00000356994.7:-464 NM_015356:-464 NM_182706:-464 LF210317:-478 MA445894:-478 |
TATA-Box annotation
| Distance to TSS: | -32 |
|---|---|
| Nearest PromoterID: | NM_021130 |
| Entrez ID: | 5478 |
| Nearest Unigene: | Hs.356331 |
| Nearest Refseq: | NM_021130 |
| Nearest Ensembl: | ENSG00000196262 |
| Gene Name: | scribble planar cell polarity protein |
| Gene Alias: | CYPA|CYPH|HEL-S-69p |
| Gene Description: | peptidylprolyl isomerase A |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -2(TGGTATAAAAGG,-,0.00) |
