Difference between revisions of "TSS:Hg 242772.1"
From referenceTSS
| Line 5: | Line 5: | ||
|GalNAc-T5L= | |GalNAc-T5L= | ||
|all_trans=ENST00000433454.3:62 AK294681:104 NM_001105541:107 | |all_trans=ENST00000433454.3:62 AK294681:104 NM_001105541:107 | ||
| − | |chr= | + | |chr=chr8 |
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=62 | |distance=62 | ||
|distance_to_tss=-282244 | |distance_to_tss=-282244 | ||
| − | |end= | + | |end=24914880 |
|end_of_center_position=24914880 | |end_of_center_position=24914880 | ||
|entrez_id=64409 | |entrez_id=64409 | ||
| Line 28: | Line 28: | ||
|num_trans=3 | |num_trans=3 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=24914879 |
|start_of_center_position=24914879 | |start_of_center_position=24914879 | ||
|strand=+ | |strand=+ | ||
|tata_box=-33(CCTTATATAAGA,+,0.00) | |tata_box=-33(CCTTATATAAGA,+,0.00) | ||
|transcript_name=ENST00000433454.3 | |transcript_name=ENST00000433454.3 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_242772.1 | |tss_id=hg_242772.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=P07197 | |uniprot_id=P07197 | ||
}} | }} | ||
Revision as of 12:35, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 24914879 |
|---|---|
| End of the center position in the TSS region: | 24914880 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000433454.3 |
|---|---|
| Distance: | 62 |
| Num_trans: | 3 |
| All_trans: | ENST00000433454.3:62 AK294681:104 NM_001105541:107 |
TATA-Box annotation
| Distance to TSS: | -282244 |
|---|---|
| Nearest PromoterID: | NM_022479 |
| Entrez ID: | 64409 |
| Nearest Unigene: | Hs.488591 |
| Nearest Refseq: | NM_022479 |
| Nearest Ensembl: | ENSG00000185274 |
| Gene Name: | neurofilament medium chain |
| Gene Alias: | GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 |
| Gene Description: | polypeptide N-acetylgalactosaminyltransferase 17 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(CCTTATATAAGA,+,0.00) |
