Difference between revisions of "TSS:Hg 243017.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=BC005314:-49 |
| − | |chr= | + | |chr=chr9 |
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=-49 |
| − | |distance_to_tss= | + | |distance_to_tss=1781 |
| − | |end= | + | |end=101421738 |
| + | |end_of_center_position=101421729 | ||
|entrez_id=8000 | |entrez_id=8000 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
|gene_alias=PRO232 | |gene_alias=PRO232 | ||
|gene_description=prostate stem cell antigen | |gene_description=prostate stem cell antigen | ||
| − | |gene_name= | + | |gene_id=3240 |
| + | |gene_name=haptoglobin | ||
| + | |gene_source=HGNC:5141 | ||
| + | |gene_symbol=HP | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5141 | ||
|nearest_ensembl=ENSG00000167653 | |nearest_ensembl=ENSG00000167653 | ||
|nearest_promoter_id=NM_005672 | |nearest_promoter_id=NM_005672 | ||
|nearest_refseq=NM_005672 | |nearest_refseq=NM_005672 | ||
|nearest_unigene=Hs.652235 | |nearest_unigene=Hs.652235 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
| − | |start= | + | |start=101421719 |
| + | |start_of_center_position=101421728 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=BC005314 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243017.1 | |tss_id=hg_243017.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 12:41, 14 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 101421728 |
|---|---|
| End of the center position in the TSS region: | 101421729 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC005314 |
|---|---|
| Distance: | -49 |
| Num_trans: | 1 |
| All_trans: | BC005314:-49 |
TATA-Box annotation
| Distance to TSS: | 1781 |
|---|---|
| Nearest PromoterID: | NM_005672 |
| Entrez ID: | 8000 |
| Nearest Unigene: | Hs.652235 |
| Nearest Refseq: | NM_005672 |
| Nearest Ensembl: | ENSG00000167653 |
| Gene Name: | haptoglobin |
| Gene Alias: | PRO232 |
| Gene Description: | prostate stem cell antigen |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
