Difference between revisions of "TSS:Hg 243086.1"
From referenceTSS
| Line 5: | Line 5: | ||
|SP-C= | |SP-C= | ||
|all_trans=U19261:-11 BC024145:-14 BT019408:64 HQ447750:64 KJ897703:64 AB590501:64 CU692854:64 | |all_trans=U19261:-11 BC024145:-14 BT019408:64 HQ447750:64 KJ897703:64 AB590501:64 CU692854:64 | ||
| − | |chr= | + | |chr=chr9 |
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=-11 | |distance=-11 | ||
|distance_to_tss=1371 | |distance_to_tss=1371 | ||
| − | |end= | + | |end=120926139 |
|end_of_center_position=120926139 | |end_of_center_position=120926139 | ||
|entrez_id=6440 | |entrez_id=6440 | ||
| Line 28: | Line 28: | ||
|num_trans=7 | |num_trans=7 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=120926138 |
|start_of_center_position=120926138 | |start_of_center_position=120926138 | ||
|strand=- | |strand=- | ||
|transcript_name=U19261 | |transcript_name=U19261 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_243086.1 | |tss_id=hg_243086.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:42, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 120926138 |
|---|---|
| End of the center position in the TSS region: | 120926139 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | U19261 |
|---|---|
| Distance: | -11 |
| Num_trans: | 7 |
| All_trans: | U19261:-11 BC024145:-14 BT019408:64 HQ447750:64 KJ897703:64 AB590501:64 CU692854:64 |
TATA-Box annotation
| Distance to TSS: | 1371 |
|---|---|
| Nearest PromoterID: | NM_001172410 |
| Entrez ID: | 6440 |
| Nearest Unigene: | Hs.1074 |
| Nearest Refseq: | NM_003018 |
| Nearest Ensembl: | ENSG00000168484 |
| Gene Name: | TNF receptor associated factor 1 |
| Gene Alias: | BRICD6|PSP-C|SFTP2|SMDP2|SP-C |
| Gene Description: | surfactant protein C |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
