Difference between revisions of "TSS:Hg 243098.1"
From referenceTSS
| Line 3: | Line 3: | ||
|SH3D4= | |SH3D4= | ||
|all_trans=AB307718:-103 HQ692856:-103 HQ709184:-103 EU446475:-104 AB463946:-104 JF432187:-105 KJ891201:-105 KR710870:-105 CU689402:-106 U76388:-118 | |all_trans=AB307718:-103 HQ692856:-103 HQ709184:-103 EU446475:-104 AB463946:-104 JF432187:-105 KJ891201:-105 KR710870:-105 CU689402:-106 U76388:-118 | ||
| − | |chr= | + | |chr=chr9 |
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=-103 | |distance=-103 | ||
|distance_to_tss=-29472 | |distance_to_tss=-29472 | ||
| − | |end= | + | |end=124503292 |
|end_of_center_position=124503292 | |end_of_center_position=124503292 | ||
|entrez_id=10174 | |entrez_id=10174 | ||
| Line 26: | Line 26: | ||
|num_trans=10 | |num_trans=10 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=124503291 |
|start_of_center_position=124503291 | |start_of_center_position=124503291 | ||
| − | |strand= | + | |strand=- |
|transcript_name=AB307718 HQ692856 HQ709184 | |transcript_name=AB307718 HQ692856 HQ709184 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_243098.1 | |tss_id=hg_243098.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=B6ZGU8 F1D8R8 | |uniprot_id=B6ZGU8 F1D8R8 | ||
}} | }} | ||
Revision as of 12:43, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 124503291 |
|---|---|
| End of the center position in the TSS region: | 124503292 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB307718 HQ692856 HQ709184 |
|---|---|
| Distance: | -103 |
| Num_trans: | 10 |
| All_trans: | AB307718:-103 HQ692856:-103 HQ709184:-103 EU446475:-104 AB463946:-104 JF432187:-105 KJ891201:-105 KR710870:-105 CU689402:-106 U76388:-118 |
TATA-Box annotation
| Distance to TSS: | -29472 |
|---|---|
| Nearest PromoterID: | NM_005775 |
| Entrez ID: | 10174 |
| Nearest Unigene: | Hs.528572 |
| Nearest Refseq: | NM_005775 |
| Nearest Ensembl: | ENSG00000120896 |
| Gene Name: | nuclear receptor subfamily 5 group A member 1 |
| Gene Alias: | SCAM-1|SCAM1|SH3D4 |
| Gene Description: | sorbin and SH3 domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.288557 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
