Difference between revisions of "TSS:Hg 243105.1"
From referenceTSS
| Line 4: | Line 4: | ||
|NKX3A= | |NKX3A= | ||
|all_trans=BC071915:-3 U12465:-4 ENST00000373570.8:5 ENST00000493018.5:-11 ENST00000487431.1:-12 BC000348:-21 AK291072:-31 ENST00000348462.6:-33 NM_007209:-33 BC010919:-33 D28448:-33 ENST00000629845.1:-37 ENST00000495728.1:-57 BC094828:364 CU674168:364 KJ893256:364 KJ898381:364 DQ891363:364 DQ894543:364 CR456877:364 | |all_trans=BC071915:-3 U12465:-4 ENST00000373570.8:5 ENST00000493018.5:-11 ENST00000487431.1:-12 BC000348:-21 AK291072:-31 ENST00000348462.6:-33 NM_007209:-33 BC010919:-33 D28448:-33 ENST00000629845.1:-37 ENST00000495728.1:-57 BC094828:364 CU674168:364 KJ893256:364 KJ898381:364 DQ891363:364 DQ894543:364 CR456877:364 | ||
| − | |chr= | + | |chr=chr9 |
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=-3 | |distance=-3 | ||
|distance_to_tss=47279 | |distance_to_tss=47279 | ||
| − | |end= | + | |end=124861924 |
|end_of_center_position=124861922 | |end_of_center_position=124861922 | ||
|entrez_id=4824 | |entrez_id=4824 | ||
| Line 27: | Line 27: | ||
|num_trans=20 | |num_trans=20 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=124861919 |
|start_of_center_position=124861921 | |start_of_center_position=124861921 | ||
| − | |strand= | + | |strand=- |
|transcript_name=BC071915 | |transcript_name=BC071915 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_243105.1 | |tss_id=hg_243105.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:43, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 124861921 |
|---|---|
| End of the center position in the TSS region: | 124861922 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC071915 |
|---|---|
| Distance: | -3 |
| Num_trans: | 20 |
| All_trans: | BC071915:-3 U12465:-4 ENST00000373570.8:5 ENST00000493018.5:-11 ENST00000487431.1:-12 BC000348:-21 AK291072:-31 ENST00000348462.6:-33 NM_007209:-33 BC010919:-33 D28448:-33 ENST00000629845.1:-37 ENST00000495728.1:-57 BC094828:364 CU674168:364 KJ893256:364 KJ898381:364 DQ891363:364 DQ894543:364 CR456877:364 |
TATA-Box annotation
| Distance to TSS: | 47279 |
|---|---|
| Nearest PromoterID: | NM_001256339 |
| Entrez ID: | 4824 |
| Nearest Unigene: | Hs.55999 |
| Nearest Refseq: | NM_006167 |
| Nearest Ensembl: | ENSG00000167034 |
| Gene Name: | ribosomal protein L35 |
| Gene Alias: | BAPX2|NKX3|NKX3.1|NKX3A |
| Gene Description: | NK3 homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
