Difference between revisions of "TSS:Hg 243175.1"
From referenceTSS
| Line 2: | Line 2: | ||
|NCRNA00293= | |NCRNA00293= | ||
|all_trans=BC152818:18 BC156735:18 AB590758:18 ENST00000645419.1:-89 AB593065:-89 AF156889:-99 AB593066:-114 ENST00000371746.9:-130 NM_014564:-130 | |all_trans=BC152818:18 BC156735:18 AB590758:18 ENST00000645419.1:-89 AB593065:-89 AF156889:-99 AB593066:-114 ENST00000371746.9:-130 NM_014564:-130 | ||
| − | |chr= | + | |chr=chr9 |
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=18 | |distance=18 | ||
|distance_to_tss=-10529 | |distance_to_tss=-10529 | ||
| − | |end= | + | |end=136203059 |
|end_of_center_position=136203059 | |end_of_center_position=136203059 | ||
|entrez_id=497634 | |entrez_id=497634 | ||
| Line 25: | Line 25: | ||
|num_trans=9 | |num_trans=9 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=136203058 |
|start_of_center_position=136203058 | |start_of_center_position=136203058 | ||
| − | |strand= | + | |strand=- |
|transcript_name=BC152818 BC156735 AB590758 | |transcript_name=BC152818 BC156735 AB590758 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_243175.1 | |tss_id=hg_243175.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:44, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136203058 |
|---|---|
| End of the center position in the TSS region: | 136203059 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC152818 BC156735 AB590758 |
|---|---|
| Distance: | 18 |
| Num_trans: | 9 |
| All_trans: | BC152818:18 BC156735:18 AB590758:18 ENST00000645419.1:-89 AB593065:-89 AF156889:-99 AB593066:-114 ENST00000371746.9:-130 NM_014564:-130 |
TATA-Box annotation
| Distance to TSS: | -10529 |
|---|---|
| Nearest PromoterID: | NR_027012 |
| Entrez ID: | 497634 |
| Nearest Unigene: | Hs.406982 |
| Nearest Refseq: | NR_027012 |
| Nearest Ensembl: | |
| Gene Name: | LIM homeobox 3 |
| Gene Alias: | BEYLA|NCRNA00293 |
| Gene Description: | long intergenic non-protein coding RNA 293 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.402985 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
