Difference between revisions of "TSS:Hg 243231.1"
From referenceTSS
| Line 3: | Line 3: | ||
|SGKL= | |SGKL= | ||
|all_trans=ENST00000673487.1:165 NM_001368999:175 NM_001368997:175 NM_001368996:175 NM_001368995:175 NM_001369003:175 NM_001369002:175 NM_001369001:175 NM_001369000:175 NR_160928:175 NR_160927:175 NR_160926:175 NR_160925:175 NR_160924:175 NR_160923:175 NR_160922:175 NR_160929:175 ENST00000436040.7:177 ENST00000473270.1:185 ENST00000460940.6:193 ENST00000495360.6:193 LF354214:214 MA589791:214 ENST00000485479.6:230 ENST00000673248.1:230 ENST00000673360.1:233 ENST00000489583.1:308 ENST00000482687.6:320 LF206416:-355 MA441993:-355 ENST00000468275.6:425 ENST00000467331.6:443 | |all_trans=ENST00000673487.1:165 NM_001368999:175 NM_001368997:175 NM_001368996:175 NM_001368995:175 NM_001369003:175 NM_001369002:175 NM_001369001:175 NM_001369000:175 NR_160928:175 NR_160927:175 NR_160926:175 NR_160925:175 NR_160924:175 NR_160923:175 NR_160922:175 NR_160929:175 ENST00000436040.7:177 ENST00000473270.1:185 ENST00000460940.6:193 ENST00000495360.6:193 LF354214:214 MA589791:214 ENST00000485479.6:230 ENST00000673248.1:230 ENST00000673360.1:233 ENST00000489583.1:308 ENST00000482687.6:320 LF206416:-355 MA441993:-355 ENST00000468275.6:425 ENST00000467331.6:443 | ||
| − | |chr= | + | |chr=chr9 |
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance=165 | |distance=165 | ||
|distance_to_tss=-399 | |distance_to_tss=-399 | ||
| − | |end= | + | |end=33025309 |
|end_of_center_position=33025302 | |end_of_center_position=33025302 | ||
|entrez_id=23678 | |entrez_id=23678 | ||
| Line 26: | Line 26: | ||
|num_trans=32 | |num_trans=32 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=33025294 |
|start_of_center_position=33025301 | |start_of_center_position=33025301 | ||
| − | |strand= | + | |strand=- |
|transcript_name=ENST00000673487.1 | |transcript_name=ENST00000673487.1 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 12:46, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 33025301 |
|---|---|
| End of the center position in the TSS region: | 33025302 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000673487.1 |
|---|---|
| Distance: | 165 |
| Num_trans: | 32 |
| All_trans: | ENST00000673487.1:165 NM_001368999:175 NM_001368997:175 NM_001368996:175 NM_001368995:175 NM_001369003:175 NM_001369002:175 NM_001369001:175 NM_001369000:175 NR_160928:175 NR_160927:175 NR_160926:175 NR_160925:175 NR_160924:175 NR_160923:175 NR_160922:175 NR_160929:175 ENST00000436040.7:177 ENST00000473270.1:185 ENST00000460940.6:193 ENST00000495360.6:193 LF354214:214 MA589791:214 ENST00000485479.6:230 ENST00000673248.1:230 ENST00000673360.1:233 ENST00000489583.1:308 ENST00000482687.6:320 LF206416:-355 MA441993:-355 ENST00000468275.6:425 ENST00000467331.6:443 |
TATA-Box annotation
| Distance to TSS: | -399 |
|---|---|
| Nearest PromoterID: | NM_001033578 |
| Entrez ID: | 23678 |
| Nearest Unigene: | Hs.613417 |
| Nearest Refseq: | NM_013257 |
| Nearest Ensembl: | ENSG00000104205 |
| Gene Name: | aprataxin |
| Gene Alias: | CISK|SGK2|SGKL |
| Gene Description: | serum/glucocorticoid regulated kinase family member 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
