Difference between revisions of "TSS:Hg 243384.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000374517.5:-35 NM_003329:-35 NM_001244938:-35 uc004bep.3:-35 AK289508:43 D28376:51 BX647247:63 X77584:89 BC054866:97 BC003377:112 J04026:112 ENST...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |TRX= |
| + | |TRX1= | ||
| + | |all_trans=CU690563:-130 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| − | |distance=- | + | |distance=-130 |
| − | |distance_to_tss= | + | |distance_to_tss=-97 |
| − | |end= | + | |end=93125048 |
| + | |end_of_center_position=93125044 | ||
|entrez_id=7295 | |entrez_id=7295 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
| − | |gene_alias=TRDX | + | |gene_alias=TRDX{{!}}TRX{{!}}TRX1 |
|gene_description=thioredoxin | |gene_description=thioredoxin | ||
|gene_id=7295 | |gene_id=7295 | ||
| − | |gene_name= | + | |gene_name=TXN |
|gene_source=HGNC:12435 | |gene_source=HGNC:12435 | ||
|gene_symbol=TXN | |gene_symbol=TXN | ||
| Line 18: | Line 21: | ||
|hgnc_mgi_id=HGNC:12435 | |hgnc_mgi_id=HGNC:12435 | ||
|nearest_ensembl=ENSG00000136810 | |nearest_ensembl=ENSG00000136810 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001244938 |
|nearest_refseq=NM_003329 | |nearest_refseq=NM_003329 | ||
|nearest_unigene=Hs.435136 | |nearest_unigene=Hs.435136 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
| − | |start= | + | |start=93125038 |
| − | |strand= | + | |start_of_center_position=93125043 |
| − | |tata_box= | + | |strand=+ |
| − | |transcript_name= | + | |tata_box=62(CAGTTTATAAAG,-,0.00),64(GTTTATAAAGGG,+,0.00),64(GTTTATAAAGGG,-,0.00) |
| − | |tss_classification= | + | |transcript_name=CU690563 |
| + | |tss_classification=no | ||
|tss_id=hg_243384.1 | |tss_id=hg_243384.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=H9ZYJ2 P10599 | |uniprot_id=H9ZYJ2 P10599 | ||
}} | }} | ||
Latest revision as of 12:49, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 93125043 |
|---|---|
| End of the center position in the TSS region: | 93125044 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | CU690563 |
|---|---|
| Distance: | -130 |
| Num_trans: | 1 |
| All_trans: | CU690563:-130 |
TATA-Box annotation
| Distance to TSS: | -97 |
|---|---|
| Nearest PromoterID: | NM_001244938 |
| Entrez ID: | 7295 |
| Nearest Unigene: | Hs.435136 |
| Nearest Refseq: | NM_003329 |
| Nearest Ensembl: | ENSG00000136810 |
| Gene Name: | TXN |
| Gene Alias: | TRDX|TRX|TRX1 |
| Gene Description: | thioredoxin |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 62(CAGTTTATAAAG,-,0.00),64(GTTTATAAAGGG,+,0.00),64(GTTTATAAAGGG,-,0.00) |
