Difference between revisions of "TSS:Hg 243424.1"
From referenceTSS
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|Cep215= | |Cep215= | ||
|MCPH3= | |MCPH3= | ||
| − | |all_trans= | + | |all_trans=Y17178:54 LF317166:-155 MA552743:-155 Y17180:199 Y17172:232 AJ270690:265 AK129724:-273 AF212044:-317 Y17176:351 Y16707:377 AY326467:-383 Y17173:403 BC016776:-415 BC016827:-415 |
| − | |chr= | + | |chr=chrM |
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=54 |
| − | |distance_to_tss= | + | |distance_to_tss=132168 |
| − | |end= | + | |end=11343 |
|end_of_center_position=11339 | |end_of_center_position=11339 | ||
|entrez_id=55755 | |entrez_id=55755 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
| − | |gene_alias=C48 | + | |gene_alias=C48{{!}}Cep215{{!}}MCPH3 |
|gene_description=CDK5 regulatory subunit associated protein 2 | |gene_description=CDK5 regulatory subunit associated protein 2 | ||
|gene_id=55755 | |gene_id=55755 | ||
| − | |gene_name= | + | |gene_name=CDK5RAP2 |
|gene_source=HGNC:18672 | |gene_source=HGNC:18672 | ||
|gene_symbol=CDK5RAP2 | |gene_symbol=CDK5RAP2 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:18672 | |hgnc_mgi_id=HGNC:18672 | ||
|nearest_ensembl=ENSG00000136861 | |nearest_ensembl=ENSG00000136861 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_073557 |
|nearest_refseq=NM_018249 | |nearest_refseq=NM_018249 | ||
|nearest_unigene=Hs.269560 | |nearest_unigene=Hs.269560 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
| − | |start= | + | |start=11334 |
|start_of_center_position=11338 | |start_of_center_position=11338 | ||
| − | |strand= | + | |strand=+ |
| − | |transcript_name= | + | |transcript_name=Y17178 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_243424.1 | |tss_id=hg_243424.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q5JTU8 | |uniprot_id=Q5JTU8 | ||
}} | }} | ||
Latest revision as of 12:50, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 11338 |
|---|---|
| End of the center position in the TSS region: | 11339 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | Y17178 |
|---|---|
| Distance: | 54 |
| Num_trans: | 14 |
| All_trans: | Y17178:54 LF317166:-155 MA552743:-155 Y17180:199 Y17172:232 AJ270690:265 AK129724:-273 AF212044:-317 Y17176:351 Y16707:377 AY326467:-383 Y17173:403 BC016776:-415 BC016827:-415 |
TATA-Box annotation
| Distance to TSS: | 132168 |
|---|---|
| Nearest PromoterID: | NR_073557 |
| Entrez ID: | 55755 |
| Nearest Unigene: | Hs.269560 |
| Nearest Refseq: | NM_018249 |
| Nearest Ensembl: | ENSG00000136861 |
| Gene Name: | CDK5RAP2 |
| Gene Alias: | C48|Cep215|MCPH3 |
| Gene Description: | CDK5 regulatory subunit associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
