Difference between revisions of "TSS:Hg 243471.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_001257975:-38 AK296363:-38 ENST00000538431.5:127 uc011mas.3:127 ENST00000324544.6:289 uc064wcd.1:289 ENST00000357558.9:477 ENST00000372938.9:477 NM_0...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |NP94= |
| − | |chr= | + | |ZNF356= |
| + | |all_trans=BC035825:-21 BC035832:26 BC008007:-29 AB462504:-32 BC018940:-37 BC000845:-40 U25123:-44 AY029066:-45 AB019564:54 X51525:-56 LF641695:-57 LF641696:-57 LF641697:-57 LQ059297:-57 LQ059298:-57 LQ059299:-57 MA264841:-57 MA264842:-57 MA264843:-57 MS942517:-57 MS942518:-57 MS942519:-57 AK026634:-58 Y17170:114 AK126611:167 AF054990:178 BC006998:236 S64650:-252 Y17174:262 BC018865:365 DQ593292:-466 | ||
| + | |chr=chrM | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance=- | + | |distance=-21 |
|distance_to_tss=38 | |distance_to_tss=38 | ||
| − | |end= | + | |end=1728 |
| + | |end_of_center_position=1728 | ||
|entrez_id=25792 | |entrez_id=25792 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=LSFR1 | + | |gene_alias=LSFR1{{!}}NP94{{!}}ZNF356 |
|gene_description=CDKN1A interacting zinc finger protein 1 | |gene_description=CDKN1A interacting zinc finger protein 1 | ||
|gene_id=25792 | |gene_id=25792 | ||
| − | |gene_name= | + | |gene_name=CIZ1 |
|gene_source=HGNC:16744 | |gene_source=HGNC:16744 | ||
|gene_symbol=CIZ1 | |gene_symbol=CIZ1 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_012127 | |nearest_refseq=NM_012127 | ||
|nearest_unigene=Hs.212395 | |nearest_unigene=Hs.212395 | ||
| − | |num_trans= | + | |num_trans=31 |
|species=human | |species=human | ||
| − | |start= | + | |start=1727 |
| − | |strand= | + | |start_of_center_position=1727 |
| − | |transcript_name= | + | |strand=+ |
| + | |transcript_name=BC035825 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243471.1 | |tss_id=hg_243471.1 | ||
Latest revision as of 12:51, 14 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 1727 |
|---|---|
| End of the center position in the TSS region: | 1728 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC035825 |
|---|---|
| Distance: | -21 |
| Num_trans: | 31 |
| All_trans: | BC035825:-21 BC035832:26 BC008007:-29 AB462504:-32 BC018940:-37 BC000845:-40 U25123:-44 AY029066:-45 AB019564:54 X51525:-56 LF641695:-57 LF641696:-57 LF641697:-57 LQ059297:-57 LQ059298:-57 LQ059299:-57 MA264841:-57 MA264842:-57 MA264843:-57 MS942517:-57 MS942518:-57 MS942519:-57 AK026634:-58 Y17170:114 AK126611:167 AF054990:178 BC006998:236 S64650:-252 Y17174:262 BC018865:365 DQ593292:-466 |
TATA-Box annotation
| Distance to TSS: | 38 |
|---|---|
| Nearest PromoterID: | NM_001257975 |
| Entrez ID: | 25792 |
| Nearest Unigene: | Hs.212395 |
| Nearest Refseq: | NM_012127 |
| Nearest Ensembl: | ENSG00000148337 |
| Gene Name: | CIZ1 |
| Gene Alias: | LSFR1|NP94|ZNF356 |
| Gene Description: | CDKN1A interacting zinc finger protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
