Difference between revisions of "TSS:Hg 243472.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |SAE3= |
| − | |chr= | + | |all_trans=BC035825:-23 BC035832:23 BC008007:-31 AB462504:-34 BC018940:-39 BC000845:-42 U25123:-46 AY029066:-47 AB019564:51 X51525:-58 LF641695:-59 LF641696:-59 LF641697:-59 LQ059297:-59 LQ059298:-59 LQ059299:-59 MA264841:-59 MA264842:-59 MA264843:-59 MS942517:-59 MS942518:-59 MS942519:-59 AK026634:-60 Y17170:111 AK126611:164 AF054990:175 BC006998:233 S64650:-254 Y17174:259 BC018865:362 DQ593292:-468 |
| + | |chr=chrM | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance= | + | |distance=-23 |
|distance_to_tss=-14713 | |distance_to_tss=-14713 | ||
| − | |end= | + | |end=1731 |
| + | |end_of_center_position=1731 | ||
|entrez_id=375757 | |entrez_id=375757 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=C9orf119 | + | |gene_alias=C9orf119{{!}}SAE3 |
|gene_description=SWI5 homologous recombination repair protein | |gene_description=SWI5 homologous recombination repair protein | ||
|gene_id=2801 | |gene_id=2801 | ||
| − | |gene_name= | + | |gene_name=SWI5 |
|gene_source=HGNC:4425 | |gene_source=HGNC:4425 | ||
|gene_symbol=GOLGA2 | |gene_symbol=GOLGA2 | ||
| Line 21: | Line 23: | ||
|nearest_refseq=NM_001040011 | |nearest_refseq=NM_001040011 | ||
|nearest_unigene=Hs.259594 | |nearest_unigene=Hs.259594 | ||
| − | |num_trans= | + | |num_trans=31 |
|species=human | |species=human | ||
| − | |start= | + | |start=1729 |
| − | |strand= | + | |start_of_center_position=1730 |
| − | |transcript_name= | + | |strand=+ |
| + | |transcript_name=BC035825 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243472.1 | |tss_id=hg_243472.1 | ||
Latest revision as of 12:51, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 1730 |
|---|---|
| End of the center position in the TSS region: | 1731 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC035825 |
|---|---|
| Distance: | -23 |
| Num_trans: | 31 |
| All_trans: | BC035825:-23 BC035832:23 BC008007:-31 AB462504:-34 BC018940:-39 BC000845:-42 U25123:-46 AY029066:-47 AB019564:51 X51525:-58 LF641695:-59 LF641696:-59 LF641697:-59 LQ059297:-59 LQ059298:-59 LQ059299:-59 MA264841:-59 MA264842:-59 MA264843:-59 MS942517:-59 MS942518:-59 MS942519:-59 AK026634:-60 Y17170:111 AK126611:164 AF054990:175 BC006998:233 S64650:-254 Y17174:259 BC018865:362 DQ593292:-468 |
TATA-Box annotation
| Distance to TSS: | -14713 |
|---|---|
| Nearest PromoterID: | NM_001318092 |
| Entrez ID: | 375757 |
| Nearest Unigene: | Hs.259594 |
| Nearest Refseq: | NM_001040011 |
| Nearest Ensembl: | ENSG00000175854 |
| Gene Name: | SWI5 |
| Gene Alias: | C9orf119|SAE3 |
| Gene Description: | SWI5 homologous recombination repair protein |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
