Difference between revisions of "TSS:Hg 243517.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BC152818:18 BC156735:18 AB590758:18 AB593065:-89 ENST00000371746.7:-99 uc004cgz.3:-99 AF156889:-99 NM_014564:-114 AB593066:-114 |chr=chr9 |cpg_percent=0...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |LIM3= |
| − | |chr= | + | |M2-LHX3= |
| + | |all_trans=BC009316:26 AK026170:-194 AB462505:204 DQ593671:-253 BC018865:-407 DQ596276:494 | ||
| + | |chr=chrM | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| − | |distance= | + | |distance=26 |
| − | |distance_to_tss= | + | |distance_to_tss=130 |
| − | |end= | + | |end=2508 |
| + | |end_of_center_position=2504 | ||
|entrez_id=8022 | |entrez_id=8022 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=CPHD3 | + | |gene_alias=CPHD3{{!}}LIM3{{!}}M2-LHX3 |
|gene_description=LIM homeobox 3 | |gene_description=LIM homeobox 3 | ||
|gene_id=8022 | |gene_id=8022 | ||
| − | |gene_name= | + | |gene_name=LHX3 |
|gene_source=HGNC:6595 | |gene_source=HGNC:6595 | ||
|gene_symbol=LHX3 | |gene_symbol=LHX3 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_014564 | |nearest_refseq=NM_014564 | ||
|nearest_unigene=Hs.148427 | |nearest_unigene=Hs.148427 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
| − | |start= | + | |start=2499 |
| − | |strand= | + | |start_of_center_position=2503 |
| − | |transcript_name= | + | |strand=+ |
| + | |transcript_name=BC009316 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243517.1 | |tss_id=hg_243517.1 | ||
Latest revision as of 12:52, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 2503 |
|---|---|
| End of the center position in the TSS region: | 2504 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC009316 |
|---|---|
| Distance: | 26 |
| Num_trans: | 6 |
| All_trans: | BC009316:26 AK026170:-194 AB462505:204 DQ593671:-253 BC018865:-407 DQ596276:494 |
TATA-Box annotation
| Distance to TSS: | 130 |
|---|---|
| Nearest PromoterID: | NM_014564 |
| Entrez ID: | 8022 |
| Nearest Unigene: | Hs.148427 |
| Nearest Refseq: | NM_014564 |
| Nearest Ensembl: | ENSG00000107187 |
| Gene Name: | LHX3 |
| Gene Alias: | CPHD3|LIM3|M2-LHX3 |
| Gene Description: | LIM homeobox 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
