Difference between revisions of "TSS:Hg 243520.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SEC16L= | |SEC16L= | ||
|all_trans=AB462505:67 BC009316:-101 AK026170:-329 DQ596276:357 DQ593671:-388 | |all_trans=AB462505:67 BC009316:-101 AK026170:-329 DQ596276:357 DQ593671:-388 | ||
| − | |chr= | + | |chr=chrM |
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=67 | |distance=67 | ||
|distance_to_tss=-6414 | |distance_to_tss=-6414 | ||
| − | |end= | + | |end=2645 |
|end_of_center_position=2640 | |end_of_center_position=2640 | ||
|entrez_id=158055 | |entrez_id=158055 | ||
| Line 26: | Line 26: | ||
|p250= | |p250= | ||
|species=human | |species=human | ||
| − | |start= | + | |start=2634 |
|start_of_center_position=2639 | |start_of_center_position=2639 | ||
| − | |strand= | + | |strand=+ |
|transcript_name=AB462505 | |transcript_name=AB462505 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_243520.1 | |tss_id=hg_243520.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A4QN18 A4QN19 | |uniprot_id=A4QN18 A4QN19 | ||
}} | }} | ||
Latest revision as of 12:52, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 2639 |
|---|---|
| End of the center position in the TSS region: | 2640 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB462505 |
|---|---|
| Distance: | 67 |
| Num_trans: | 5 |
| All_trans: | AB462505:67 BC009316:-101 AK026170:-329 DQ596276:357 DQ593671:-388 |
TATA-Box annotation
| Distance to TSS: | -6414 |
|---|---|
| Nearest PromoterID: | NM_152571 |
| Entrez ID: | 158055 |
| Nearest Unigene: | Hs.212613 |
| Nearest Refseq: | NM_152571 |
| Nearest Ensembl: | |
| Gene Name: | C9orf163 |
| Gene Alias: | - |
| Gene Description: | chromosome 9 open reading frame 163 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
