Difference between revisions of "TSS:Hg 243523.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000277541.6:72 uc004chz.4:72 NM_017617:148 AF308602:148 M73980:148 FR772924:-268 LG052812:-325 |chr=chr9 |cpg_percent=0.195 |distance=72 |distance...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |AOVD1= |
| − | |chr= | + | |TAN1= |
| + | |all_trans=AB462505:41 BC009316:-134 DQ596276:331 AK026170:-362 DQ593671:-421 | ||
| + | |chr=chrM | ||
|cpg_percent=0.195 | |cpg_percent=0.195 | ||
| − | |distance= | + | |distance=41 |
| − | |distance_to_tss= | + | |distance_to_tss=114 |
| − | |end= | + | |end=2671 |
| + | |end_of_center_position=2670 | ||
|entrez_id=4851 | |entrez_id=4851 | ||
|gc_percent=0.835821 | |gc_percent=0.835821 | ||
| − | |gene_alias=AOS5 | + | |gene_alias=AOS5{{!}}AOVD1{{!}}TAN1{{!}}hN1 |
| − | |gene_description=notch 1 | + | |gene_description=notch receptor 1 |
|gene_id=4851 | |gene_id=4851 | ||
| − | |gene_name= | + | |gene_name=NOTCH1 |
|gene_source=HGNC:7881 | |gene_source=HGNC:7881 | ||
|gene_symbol=NOTCH1 | |gene_symbol=NOTCH1 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hN1= | ||
|hgnc_mgi_id=HGNC:7881 | |hgnc_mgi_id=HGNC:7881 | ||
|nearest_ensembl=ENSG00000148400 | |nearest_ensembl=ENSG00000148400 | ||
| Line 21: | Line 25: | ||
|nearest_refseq=NM_017617 | |nearest_refseq=NM_017617 | ||
|nearest_unigene=Hs.495473 | |nearest_unigene=Hs.495473 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
| − | |start= | + | |start=2667 |
| − | |strand= | + | |start_of_center_position=2669 |
| − | |transcript_name= | + | |strand=+ |
| + | |transcript_name=AB462505 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243523.1 | |tss_id=hg_243523.1 | ||
Latest revision as of 12:52, 14 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 2669 |
|---|---|
| End of the center position in the TSS region: | 2670 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB462505 |
|---|---|
| Distance: | 41 |
| Num_trans: | 5 |
| All_trans: | AB462505:41 BC009316:-134 DQ596276:331 AK026170:-362 DQ593671:-421 |
TATA-Box annotation
| Distance to TSS: | 114 |
|---|---|
| Nearest PromoterID: | NM_017617 |
| Entrez ID: | 4851 |
| Nearest Unigene: | Hs.495473 |
| Nearest Refseq: | NM_017617 |
| Nearest Ensembl: | ENSG00000148400 |
| Gene Name: | NOTCH1 |
| Gene Alias: | AOS5|AOVD1|TAN1|hN1 |
| Gene Description: | notch receptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.195 |
| GC%: | 0.835821 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
