Difference between revisions of "TSS:Mm 100228.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr11 |cpg_percent=0.015 |distance= |distance_to_tss=41204 |end=117156385 |entrez_id=74136 |gc_percent=0.58209 |gene_alias=1200017E04Rik|2810012L19Rik|Naa-35...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |2810012L19Rik= | ||
| + | |Naa-35= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=20368 |
|end=117156385 | |end=117156385 | ||
| + | |end_of_center_position=117156376 | ||
|entrez_id=74136 | |entrez_id=74136 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=1200017E04Rik | + | |gene_alias=1200017E04Rik{{!}}2810012L19Rik{{!}}Naa-35 |
|gene_description=SEC14-like lipid binding 1 | |gene_description=SEC14-like lipid binding 1 | ||
|gene_name=Sec14l1 | |gene_name=Sec14l1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000020823 | |nearest_ensembl=ENSMUSG00000020823 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001363165 |
|nearest_refseq=NM_028777 | |nearest_refseq=NM_028777 | ||
|nearest_unigene=Mm.272312 | |nearest_unigene=Mm.272312 | ||
| Line 18: | Line 21: | ||
|species=mouse | |species=mouse | ||
|start=117156366 | |start=117156366 | ||
| + | |start_of_center_position=117156375 | ||
|strand=+ | |strand=+ | ||
|transcript_name= | |transcript_name= | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_100228.1 | |tss_id=mm_100228.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 09:55, 16 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 117156375 |
|---|---|
| End of the center position in the TSS region: | 117156376 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 20368 |
|---|---|
| Nearest PromoterID: | NM_001363165 |
| Entrez ID: | 74136 |
| Nearest Unigene: | Mm.272312 |
| Nearest Refseq: | NM_028777 |
| Nearest Ensembl: | ENSMUSG00000020823 |
| Gene Name: | Sec14l1 |
| Gene Alias: | 1200017E04Rik|2810012L19Rik|Naa-35 |
| Gene Description: | SEC14-like lipid binding 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
