Difference between revisions of "TSS:Mm 100343.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 4: | Line 4: | ||
|Ppicap= | |Ppicap= | ||
|Tango10b= | |Tango10b= | ||
| + | |all_trans=LF231556:-44 MA467133:-44 LF231555:-314 MA467132:-314 LF231557:379 MA467134:379 LF231553:-433 MA467130:-433 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=-44 |
| − | |distance_to_tss= | + | |distance_to_tss=7949 |
|end=118394017 | |end=118394017 | ||
|end_of_center_position=118394011 | |end_of_center_position=118394011 | ||
|entrez_id=19039 | |entrez_id=19039 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=90K | + | |gene_alias=90K{{!}}CyCAP{{!}}MAC-2BP{{!}}Ppicap{{!}}Tango10b |
| − | |gene_description= | + | |gene_description=lectin, galactoside-binding, soluble, 3 binding protein |
|gene_name=Lgals3bp | |gene_name=Lgals3bp | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 20: | Line 21: | ||
|nearest_refseq=NM_011150 | |nearest_refseq=NM_011150 | ||
|nearest_unigene=Mm.3152 | |nearest_unigene=Mm.3152 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=mouse | |species=mouse | ||
|start=118394003 | |start=118394003 | ||
|start_of_center_position=118394010 | |start_of_center_position=118394010 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF231556 MA467133 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_100343.1 | |tss_id=mm_100343.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 09:58, 16 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 118394010 |
|---|---|
| End of the center position in the TSS region: | 118394011 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF231556 MA467133 |
|---|---|
| Distance: | -44 |
| Num_trans: | 8 |
| All_trans: | LF231556:-44 MA467133:-44 LF231555:-314 MA467132:-314 LF231557:379 MA467134:379 LF231553:-433 MA467130:-433 |
TATA-Box annotation
| Distance to TSS: | 7949 |
|---|---|
| Nearest PromoterID: | NM_011150 |
| Entrez ID: | 19039 |
| Nearest Unigene: | Mm.3152 |
| Nearest Refseq: | NM_011150 |
| Nearest Ensembl: | ENSMUSG00000033880 |
| Gene Name: | Lgals3bp |
| Gene Alias: | 90K|CyCAP|MAC-2BP|Ppicap|Tango10b |
| Gene Description: | lectin, galactoside-binding, soluble, 3 binding protein |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
