Difference between revisions of "TSS:Mm 100423.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 2: | Line 2: | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=48470 |
|end=119442771 | |end=119442771 | ||
|end_of_center_position=119442766 | |end_of_center_position=119442766 | ||
| − | |entrez_id= | + | |entrez_id=78439 |
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
| − | |gene_alias= | + | |gene_alias=Gm44935 |
| − | |gene_description= | + | |gene_description=RIKEN cDNA A930037H05 gene |
| − | |gene_name= | + | |gene_name=A930037H05Rik |
| − | |gene_type= | + | |gene_type=ncRNA |
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSMUSG00000109408 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_153849 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_153849 |
| − | |nearest_unigene=Mm. | + | |nearest_unigene=Mm.440446 |
|num_trans=0 | |num_trans=0 | ||
|species=mouse | |species=mouse | ||
| Line 21: | Line 21: | ||
|start_of_center_position=119442765 | |start_of_center_position=119442765 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-14(GCTTCTAAAAGG,-,0.00) |
|transcript_name= | |transcript_name= | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_100423.1 | |tss_id=mm_100423.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 09:59, 16 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 119442765 |
|---|---|
| End of the center position in the TSS region: | 119442766 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 48470 |
|---|---|
| Nearest PromoterID: | NR_153849 |
| Entrez ID: | 78439 |
| Nearest Unigene: | Mm.440446 |
| Nearest Refseq: | NR_153849 |
| Nearest Ensembl: | ENSMUSG00000109408 |
| Gene Name: | A930037H05Rik |
| Gene Alias: | Gm44935 |
| Gene Description: | RIKEN cDNA A930037H05 gene |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -14(GCTTCTAAAAGG,-,0.00) |
