Difference between revisions of "TSS:Mm 100755.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF225722:-73 MA461299:-73 LF225723:-324 MA461300:-324 LF225721:473 MA461298:473 LF225724:-477 MA461301:-477 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-73 |
|distance_to_tss=80107 | |distance_to_tss=80107 | ||
|end=4346908 | |end=4346908 | ||
| + | |end_of_center_position=4346904 | ||
|entrez_id=16878 | |entrez_id=16878 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| Line 15: | Line 17: | ||
|nearest_refseq=NM_008501 | |nearest_refseq=NM_008501 | ||
|nearest_unigene=Mm.4964 | |nearest_unigene=Mm.4964 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=mouse | |species=mouse | ||
|start=4346898 | |start=4346898 | ||
| + | |start_of_center_position=4346903 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF225722 MA461299 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_100755.1 | |tss_id=mm_100755.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 10:06, 16 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 4346903 |
|---|---|
| End of the center position in the TSS region: | 4346904 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF225722 MA461299 |
|---|---|
| Distance: | -73 |
| Num_trans: | 8 |
| All_trans: | LF225722:-73 MA461299:-73 LF225723:-324 MA461300:-324 LF225721:473 MA461298:473 LF225724:-477 MA461301:-477 |
TATA-Box annotation
| Distance to TSS: | 80107 |
|---|---|
| Nearest PromoterID: | NM_001039537 |
| Entrez ID: | 16878 |
| Nearest Unigene: | Mm.4964 |
| Nearest Refseq: | NM_008501 |
| Nearest Ensembl: | ENSMUSG00000034394 |
| Gene Name: | Lif |
| Gene Alias: | - |
| Gene Description: | leukemia inhibitory factor |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
