Difference between revisions of "TSS:Mm 100789.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK149109:250 | + | |all_trans=LF225867:-89 MA461444:-89 LF225866:108 MA461443:108 AK149109:250 LF225868:-263 MA461445:-263 LF225869:-469 MA461446:-469 |
|b2b1660Clo= | |b2b1660Clo= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-89 |
|distance_to_tss=-7980 | |distance_to_tss=-7980 | ||
|end=4939546 | |end=4939546 | ||
| Line 10: | Line 10: | ||
|entrez_id=11764 | |entrez_id=11764 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
| − | |gene_alias=Adtb1 | + | |gene_alias=Adtb1{{!}}b2b1660Clo |
| − | |gene_description= | + | |gene_description=adaptor protein complex AP-1, beta 1 subunit |
|gene_id=380684 | |gene_id=380684 | ||
| − | |gene_name= | + | |gene_name=Ap1b1 |
|gene_source=MGI:97309 | |gene_source=MGI:97309 | ||
|gene_symbol=Nefh | |gene_symbol=Nefh | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_007454 | |nearest_refseq=NM_007454 | ||
|nearest_unigene=Mm.274816 | |nearest_unigene=Mm.274816 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=4939535 | |start=4939535 | ||
|start_of_center_position=4939540 | |start_of_center_position=4939540 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF225867 MA461444 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_100789.1 | |tss_id=mm_100789.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 10:07, 16 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 4939540 |
|---|---|
| End of the center position in the TSS region: | 4939541 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF225867 MA461444 |
|---|---|
| Distance: | -89 |
| Num_trans: | 9 |
| All_trans: | LF225867:-89 MA461444:-89 LF225866:108 MA461443:108 AK149109:250 LF225868:-263 MA461445:-263 LF225869:-469 MA461446:-469 |
TATA-Box annotation
| Distance to TSS: | -7980 |
|---|---|
| Nearest PromoterID: | NM_001243043 |
| Entrez ID: | 11764 |
| Nearest Unigene: | Mm.274816 |
| Nearest Refseq: | NM_007454 |
| Nearest Ensembl: | ENSMUSG00000009090 |
| Gene Name: | Ap1b1 |
| Gene Alias: | Adtb1|b2b1660Clo |
| Gene Description: | adaptor protein complex AP-1, beta 1 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
