Difference between revisions of "TSS:Mm 100790.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK149109:336 |chr=chr11 |cpg_percent=0.01 |distance=336 |distance_to_tss=-7894 |end=4939632 |entrez_id=11764 |gc_percent=0.507463 |gene_alias=Adtb1|b2b1...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK149109:336 | + | |all_trans=LF225867:-3 MA461444:-3 LF225868:-177 MA461445:-177 LF225866:194 MA461443:194 AK149109:336 LF225869:-383 MA461446:-383 |
| + | |b2b1660Clo= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-3 |
|distance_to_tss=-7894 | |distance_to_tss=-7894 | ||
|end=4939632 | |end=4939632 | ||
| + | |end_of_center_position=4939627 | ||
|entrez_id=11764 | |entrez_id=11764 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
| − | |gene_alias=Adtb1 | + | |gene_alias=Adtb1{{!}}b2b1660Clo |
| − | |gene_description= | + | |gene_description=adaptor protein complex AP-1, beta 1 subunit |
|gene_id=380684 | |gene_id=380684 | ||
| − | |gene_name= | + | |gene_name=Ap1b1 |
|gene_source=MGI:97309 | |gene_source=MGI:97309 | ||
|gene_symbol=Nefh | |gene_symbol=Nefh | ||
| Line 21: | Line 23: | ||
|nearest_refseq=NM_007454 | |nearest_refseq=NM_007454 | ||
|nearest_unigene=Mm.274816 | |nearest_unigene=Mm.274816 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=4939621 | |start=4939621 | ||
| + | |start_of_center_position=4939626 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF225867 MA461444 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_100790.1 | |tss_id=mm_100790.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 10:07, 16 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 4939626 |
|---|---|
| End of the center position in the TSS region: | 4939627 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF225867 MA461444 |
|---|---|
| Distance: | -3 |
| Num_trans: | 9 |
| All_trans: | LF225867:-3 MA461444:-3 LF225868:-177 MA461445:-177 LF225866:194 MA461443:194 AK149109:336 LF225869:-383 MA461446:-383 |
TATA-Box annotation
| Distance to TSS: | -7894 |
|---|---|
| Nearest PromoterID: | NM_001243043 |
| Entrez ID: | 11764 |
| Nearest Unigene: | Mm.274816 |
| Nearest Refseq: | NM_007454 |
| Nearest Ensembl: | ENSMUSG00000009090 |
| Gene Name: | Ap1b1 |
| Gene Alias: | Adtb1|b2b1660Clo |
| Gene Description: | adaptor protein complex AP-1, beta 1 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
