Difference between revisions of "TSS:Mm 100793.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=EF101556:-361 | + | |all_trans=LF225868:1 MA461445:1 LF225867:175 MA461444:175 LF225869:-197 MA461446:-197 EF101556:-361 LF225866:382 MA461443:382 LF225870:-412 MA461447:-412 |
| + | |b2b1660Clo= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=1 |
|distance_to_tss=-7707 | |distance_to_tss=-7707 | ||
|end=4939818 | |end=4939818 | ||
| + | |end_of_center_position=4939814 | ||
|entrez_id=11764 | |entrez_id=11764 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=Adtb1 | + | |gene_alias=Adtb1{{!}}b2b1660Clo |
| − | |gene_description= | + | |gene_description=adaptor protein complex AP-1, beta 1 subunit |
|gene_id=380684 | |gene_id=380684 | ||
| − | |gene_name= | + | |gene_name=Ap1b1 |
|gene_source=MGI:97309 | |gene_source=MGI:97309 | ||
|gene_symbol=Nefh | |gene_symbol=Nefh | ||
| Line 21: | Line 23: | ||
|nearest_refseq=NM_007454 | |nearest_refseq=NM_007454 | ||
|nearest_unigene=Mm.274816 | |nearest_unigene=Mm.274816 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=mouse | |species=mouse | ||
|start=4939809 | |start=4939809 | ||
| + | |start_of_center_position=4939813 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF225868 MA461445 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_100793.1 | |tss_id=mm_100793.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 10:07, 16 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 4939813 |
|---|---|
| End of the center position in the TSS region: | 4939814 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF225868 MA461445 |
|---|---|
| Distance: | 1 |
| Num_trans: | 11 |
| All_trans: | LF225868:1 MA461445:1 LF225867:175 MA461444:175 LF225869:-197 MA461446:-197 EF101556:-361 LF225866:382 MA461443:382 LF225870:-412 MA461447:-412 |
TATA-Box annotation
| Distance to TSS: | -7707 |
|---|---|
| Nearest PromoterID: | NM_001243043 |
| Entrez ID: | 11764 |
| Nearest Unigene: | Mm.274816 |
| Nearest Refseq: | NM_007454 |
| Nearest Ensembl: | ENSMUSG00000009090 |
| Gene Name: | Ap1b1 |
| Gene Alias: | Adtb1|b2b1660Clo |
| Gene Description: | adaptor protein complex AP-1, beta 1 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
