Difference between revisions of "TSS:Mm 100794.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=EF101556:-238 | + | |all_trans=LF225869:-74 MA461446:-74 LF225868:125 MA461445:125 EF101556:-238 LF225870:-289 MA461447:-289 LF225867:299 MA461444:299 |
|b2b1660Clo= | |b2b1660Clo= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance=- | + | |distance=-74 |
|distance_to_tss=-7584 | |distance_to_tss=-7584 | ||
|end=4939941 | |end=4939941 | ||
| Line 10: | Line 10: | ||
|entrez_id=11764 | |entrez_id=11764 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=Adtb1 | + | |gene_alias=Adtb1{{!}}b2b1660Clo |
| − | |gene_description= | + | |gene_description=adaptor protein complex AP-1, beta 1 subunit |
|gene_id=380684 | |gene_id=380684 | ||
| − | |gene_name= | + | |gene_name=Ap1b1 |
|gene_source=MGI:97309 | |gene_source=MGI:97309 | ||
|gene_symbol=Nefh | |gene_symbol=Nefh | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_007454 | |nearest_refseq=NM_007454 | ||
|nearest_unigene=Mm.274816 | |nearest_unigene=Mm.274816 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=4939933 | |start=4939933 | ||
|start_of_center_position=4939937 | |start_of_center_position=4939937 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF225869 MA461446 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_100794.1 | |tss_id=mm_100794.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 10:07, 16 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 4939937 |
|---|---|
| End of the center position in the TSS region: | 4939938 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF225869 MA461446 |
|---|---|
| Distance: | -74 |
| Num_trans: | 9 |
| All_trans: | LF225869:-74 MA461446:-74 LF225868:125 MA461445:125 EF101556:-238 LF225870:-289 MA461447:-289 LF225867:299 MA461444:299 |
TATA-Box annotation
| Distance to TSS: | -7584 |
|---|---|
| Nearest PromoterID: | NM_001243043 |
| Entrez ID: | 11764 |
| Nearest Unigene: | Mm.274816 |
| Nearest Refseq: | NM_007454 |
| Nearest Ensembl: | ENSMUSG00000009090 |
| Gene Name: | Ap1b1 |
| Gene Alias: | Adtb1|b2b1660Clo |
| Gene Description: | adaptor protein complex AP-1, beta 1 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
