Difference between revisions of "TSS:Mm 101200.1"
From referenceTSS
| Line 30: | Line 30: | ||
|tata_box=10(GCTTTTATGCTC,+,0.00) | |tata_box=10(GCTTTTATGCTC,+,0.00) | ||
|transcript_name=U33629 U33630 | |transcript_name=U33629 U33630 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_101200.1 | |tss_id=mm_101200.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 10:15, 16 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 19018458 |
|---|---|
| End of the center position in the TSS region: | 19018459 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | U33629 U33630 |
|---|---|
| Distance: | -180 |
| Num_trans: | 19 |
| All_trans: | U33629:-180 U33630:-180 AB221660:200 ENSMUST00000102878.10:-228 ENSMUST00000177417.7:-228 AK132298:-263 ENSMUST00000125722.7:-436 ENSMUST00000137300.1:-436 AK049720:-436 AK032947:-436 ENSMUST00000068264.13:-472 BC023689:-472 AK168684:-475 AK134321:-480 ENSMUST00000185131.7:-483 NM_010789:-483 NM_001193271:-483 AK140748:-483 ENSMUST00000144988.7:-499 |
TATA-Box annotation
| Distance to TSS: | 510 |
|---|---|
| Nearest PromoterID: | NM_001193271 |
| Entrez ID: | 17268 |
| Nearest Unigene: | Mm.356578 |
| Nearest Refseq: | NM_010789 |
| Nearest Ensembl: | ENSMUSG00000020160 |
| Gene Name: | Meis homeobox 1 |
| Gene Alias: | C530044H18Rik|Evi8 |
| Gene Description: | Meis homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 10(GCTTTTATGCTC,+,0.00) |
