Difference between revisions of "TSS:Mm 101446.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AF017112:-268 AF016040:-337 AK157727:-350 AK079842:-350 ENSMUST00000102838.9:-361 NM_009260 | + | |AL033301= |
| + | |SPTB2= | ||
| + | |Spnb-2= | ||
| + | |Spnb2= | ||
| + | |all_trans=LF226663:70 MA462240:70 AF017112:-268 AF016040:-337 AK157727:-350 AK079842:-350 ENSMUST00000102838.9:-361 NM_009260:-361 AK169544:-361 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance= | + | |distance=70 |
|distance_to_tss=381 | |distance_to_tss=381 | ||
| + | |elf1= | ||
| + | |elf3= | ||
|end=30197896 | |end=30197896 | ||
| + | |end_of_center_position=30197877 | ||
|entrez_id=20742 | |entrez_id=20742 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=9930031C03Rik | + | |gene_alias=9930031C03Rik{{!}}AL033301{{!}}SPTB2{{!}}Spnb-2{{!}}Spnb2{{!}}elf1{{!}}elf3{{!}}mKIAA4049 |
| − | |gene_description= | + | |gene_description=spectrin beta, non-erythrocytic 1 |
|gene_id=20742 | |gene_id=20742 | ||
| − | |gene_name= | + | |gene_name=Sptbn1 |
|gene_source=MGI:98388 | |gene_source=MGI:98388 | ||
|gene_symbol=Sptbn1 | |gene_symbol=Sptbn1 | ||
| Line 17: | Line 24: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:98388 | |hgnc_mgi_id=MGI:98388 | ||
| + | |mKIAA4049= | ||
|nearest_ensembl=ENSMUSG00000020315 | |nearest_ensembl=ENSMUSG00000020315 | ||
|nearest_promoter_id=NM_009260 | |nearest_promoter_id=NM_009260 | ||
| Line 24: | Line 32: | ||
|species=mouse | |species=mouse | ||
|start=30197856 | |start=30197856 | ||
| + | |start_of_center_position=30197876 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF226663 MA462240 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_101446.1 | |tss_id=mm_101446.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 10:20, 16 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 30197876 |
|---|---|
| End of the center position in the TSS region: | 30197877 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF226663 MA462240 |
|---|---|
| Distance: | 70 |
| Num_trans: | 9 |
| All_trans: | LF226663:70 MA462240:70 AF017112:-268 AF016040:-337 AK157727:-350 AK079842:-350 ENSMUST00000102838.9:-361 NM_009260:-361 AK169544:-361 |
TATA-Box annotation
| Distance to TSS: | 381 |
|---|---|
| Nearest PromoterID: | NM_009260 |
| Entrez ID: | 20742 |
| Nearest Unigene: | Mm.123110 |
| Nearest Refseq: | NM_009260 |
| Nearest Ensembl: | ENSMUSG00000020315 |
| Gene Name: | Sptbn1 |
| Gene Alias: | 9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049 |
| Gene Description: | spectrin beta, non-erythrocytic 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
