Difference between revisions of "TSS:Mm 101524.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|FGF-18= | |FGF-18= | ||
| − | |all_trans=ENSMUST00000121691.1:71 | + | |all_trans=LF198424:-5 MA434001:-5 ENSMUST00000121691.1:71 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance= | + | |distance=-5 |
|distance_to_tss=107622 | |distance_to_tss=107622 | ||
|end=33039782 | |end=33039782 | ||
| Line 10: | Line 10: | ||
|entrez_id=14172 | |entrez_id=14172 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=D130055P09Rik | + | |gene_alias=D130055P09Rik{{!}}FGF-18 |
|gene_description=fibroblast growth factor 18 | |gene_description=fibroblast growth factor 18 | ||
|gene_id= | |gene_id= | ||
| − | |gene_name= | + | |gene_name=Fgf18 |
|gene_source=MGI:3651545 | |gene_source=MGI:3651545 | ||
|gene_symbol=Rpsa-ps4 | |gene_symbol=Rpsa-ps4 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=MGI:3651545 | |hgnc_mgi_id=MGI:3651545 | ||
|nearest_ensembl=ENSMUSG00000057967 | |nearest_ensembl=ENSMUSG00000057967 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_102395 |
|nearest_refseq=NM_008005 | |nearest_refseq=NM_008005 | ||
|nearest_unigene=Mm.339812 | |nearest_unigene=Mm.339812 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=mouse | |species=mouse | ||
|start=33039773 | |start=33039773 | ||
|start_of_center_position=33039777 | |start_of_center_position=33039777 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF198424 MA434001 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_101524.1 | |tss_id=mm_101524.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 10:21, 16 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 33039777 |
|---|---|
| End of the center position in the TSS region: | 33039778 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF198424 MA434001 |
|---|---|
| Distance: | -5 |
| Num_trans: | 3 |
| All_trans: | LF198424:-5 MA434001:-5 ENSMUST00000121691.1:71 |
TATA-Box annotation
| Distance to TSS: | 107622 |
|---|---|
| Nearest PromoterID: | NR_102395 |
| Entrez ID: | 14172 |
| Nearest Unigene: | Mm.339812 |
| Nearest Refseq: | NM_008005 |
| Nearest Ensembl: | ENSMUSG00000057967 |
| Gene Name: | Fgf18 |
| Gene Alias: | D130055P09Rik|FGF-18 |
| Gene Description: | fibroblast growth factor 18 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
