Difference between revisions of "TSS:Hg 1000.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:25540 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=-96 | |distance_to_tss=-96 | ||
|end=17580470 | |end=17580470 | ||
| + | |end_of_center_position=17580457 | ||
|entrez_id=55160 | |entrez_id=55160 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:25540 | |hgnc_mgi_id=HGNC:25540 | ||
|nearest_ensembl=ENSG00000074964 | |nearest_ensembl=ENSG00000074964 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001011722 |
|nearest_refseq=NM_018125 | |nearest_refseq=NM_018125 | ||
|nearest_unigene=Hs.443460 | |nearest_unigene=Hs.443460 | ||
| − | |num_trans= | + | |num_trans=55160 |
|species=human | |species=human | ||
|start=17580443 | |start=17580443 | ||
| + | |start_of_center_position=17580456 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000375415.5 | + | |transcript_name=ENST00000375415.5 |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_1000.1 | |tss_id=hg_1000.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q9HCE6 | |uniprot_id=Q9HCE6 | ||
}} | }} | ||
Latest revision as of 17:33, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17580456 |
|---|---|
| End of the center position in the TSS region: | 17580457 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000375415.5 |
|---|---|
| Distance: | 83 |
| Num_trans: | 55160 |
| All_trans: | HGNC:25540 |
TATA-Box annotation
| Distance to TSS: | -96 |
|---|---|
| Nearest PromoterID: | NM_001011722 |
| Entrez ID: | 55160 |
| Nearest Unigene: | Hs.443460 |
| Nearest Refseq: | NM_018125 |
| Nearest Ensembl: | ENSG00000074964 |
| Gene Name: | Rho guanine nucleotide exchange factor 10 like |
| Gene Alias: | GrinchGEF |
| Gene Description: | Rho guanine nucleotide exchange factor 10 like |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
