Difference between revisions of "TSS:Hg 100003.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 8: | Line 8: | ||
|NFIB2= | |NFIB2= | ||
|NFIB3= | |NFIB3= | ||
| − | |all_trans= | + | |all_trans=HGNC:7785 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| Line 17: | Line 17: | ||
|entrez_id=4781 | |entrez_id=4781 | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
| − | |gene_alias=CTF | + | |gene_alias=CTF{{!}}HMGIC/NFIB{{!}}MACID{{!}}NF-I/B{{!}}NF1-B{{!}}NFI-B{{!}}NFI-RED{{!}}NFIB2{{!}}NFIB3 |
|gene_description=nuclear factor I B | |gene_description=nuclear factor I B | ||
|gene_id=4781 | |gene_id=4781 | ||
| Line 30: | Line 30: | ||
|nearest_refseq=NM_005596 | |nearest_refseq=NM_005596 | ||
|nearest_unigene=Hs.644095 | |nearest_unigene=Hs.644095 | ||
| − | |num_trans= | + | |num_trans=4781 |
|species=human | |species=human | ||
|start=14314567 | |start=14314567 | ||
| Line 36: | Line 36: | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000397579.6 | |transcript_name=ENST00000397579.6 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_100003.1 | |tss_id=hg_100003.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q5VW27 | |uniprot_id=Q5VW27 | ||
}} | }} | ||
Latest revision as of 17:33, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14314593 |
|---|---|
| End of the center position in the TSS region: | 14314594 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000397579.6 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4781 |
| All_trans: | HGNC:7785 |
TATA-Box annotation
| Distance to TSS: | 361 |
|---|---|
| Nearest PromoterID: | NR_161382 |
| Entrez ID: | 4781 |
| Nearest Unigene: | Hs.644095 |
| Nearest Refseq: | NM_005596 |
| Nearest Ensembl: | ENSG00000147862 |
| Gene Name: | nuclear factor I B |
| Gene Alias: | CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 |
| Gene Description: | nuclear factor I B |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
