Difference between revisions of "TSS:Hg 100020.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|HMGIC/NFIB= | |HMGIC/NFIB= | ||
| + | |MACID= | ||
|NF-I/B= | |NF-I/B= | ||
|NF1-B= | |NF1-B= | ||
| Line 7: | Line 8: | ||
|NFIB2= | |NFIB2= | ||
|NFIB3= | |NFIB3= | ||
| − | |all_trans=ENST00000421119.1:19 | + | |all_trans=NM_001369459:-10 NM_001369458:-10 NM_001369462:-10 NM_001369468:-10 ENST00000421119.1:19 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-10 |
| − | |distance_to_tss= | + | |distance_to_tss=13 |
|end=14532067 | |end=14532067 | ||
| + | |end_of_center_position=14532064 | ||
|entrez_id=4781 | |entrez_id=4781 | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
| − | |gene_alias=CTF | + | |gene_alias=CTF{{!}}HMGIC/NFIB{{!}}MACID{{!}}NF-I/B{{!}}NF1-B{{!}}NFI-B{{!}}NFI-RED{{!}}NFIB2{{!}}NFIB3 |
|gene_description=nuclear factor I B | |gene_description=nuclear factor I B | ||
| − | |gene_name=NFIB | + | |gene_id=4781 |
| + | |gene_name=nuclear factor I B | ||
| + | |gene_source=HGNC:7785 | ||
| + | |gene_symbol=NFIB | ||
| + | |gene_synonyms=NFI-RED NFIB2 NFIB3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7785 | ||
|nearest_ensembl=ENSG00000147862 | |nearest_ensembl=ENSG00000147862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001369458 |
|nearest_refseq=NM_005596 | |nearest_refseq=NM_005596 | ||
|nearest_unigene=Hs.644095 | |nearest_unigene=Hs.644095 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=14532060 | |start=14532060 | ||
| + | |start_of_center_position=14532063 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001369458.1 NM_001369459.1 NM_001369462.1 NM_001369468.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100020.1 | |tss_id=hg_100020.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 17:34, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14532063 |
|---|---|
| End of the center position in the TSS region: | 14532064 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001369458.1 NM_001369459.1 NM_001369462.1 NM_001369468.1 |
|---|---|
| Distance: | -10 |
| Num_trans: | 5 |
| All_trans: | NM_001369459:-10 NM_001369458:-10 NM_001369462:-10 NM_001369468:-10 ENST00000421119.1:19 |
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NM_001369458 |
| Entrez ID: | 4781 |
| Nearest Unigene: | Hs.644095 |
| Nearest Refseq: | NM_005596 |
| Nearest Ensembl: | ENSG00000147862 |
| Gene Name: | nuclear factor I B |
| Gene Alias: | CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 |
| Gene Description: | nuclear factor I B |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
