Difference between revisions of "TSS:Hg 100069.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_001168342:0 ENST00000507993.5:46 AK301427:46 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance_to_tss= | + | |distance=0 |
| + | |distance_to_tss=21 | ||
| + | |end=15250233 | ||
| + | |end_of_center_position=15250198 | ||
|entrez_id=158219 | |entrez_id=158219 | ||
|gc_percent=0.482587 | |gc_percent=0.482587 | ||
|gene_alias=C9orf52 | |gene_alias=C9orf52 | ||
|gene_description=tetratricopeptide repeat domain 39B | |gene_description=tetratricopeptide repeat domain 39B | ||
| − | |gene_name=TTC39B | + | |gene_id=158219 |
| + | |gene_name=tetratricopeptide repeat domain 39B | ||
| + | |gene_source=HGNC:23704 | ||
| + | |gene_symbol=TTC39B | ||
| + | |gene_synonyms=FLJ33868 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23704 | ||
|nearest_ensembl=ENSG00000155158 | |nearest_ensembl=ENSG00000155158 | ||
|nearest_promoter_id=NM_001168342 | |nearest_promoter_id=NM_001168342 | ||
|nearest_refseq=NM_152574 | |nearest_refseq=NM_152574 | ||
|nearest_unigene=Hs.563630 | |nearest_unigene=Hs.563630 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=15250161 | ||
| + | |start_of_center_position=15250197 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_001168342.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100069.1 | |tss_id=hg_100069.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5VTQ0 | ||
}} | }} | ||
Latest revision as of 17:35, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 15250197 |
|---|---|
| End of the center position in the TSS region: | 15250198 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001168342.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3 |
| All_trans: | NM_001168342:0 ENST00000507993.5:46 AK301427:46 |
TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_001168342 |
| Entrez ID: | 158219 |
| Nearest Unigene: | Hs.563630 |
| Nearest Refseq: | NM_152574 |
| Nearest Ensembl: | ENSG00000155158 |
| Gene Name: | tetratricopeptide repeat domain 39B |
| Gene Alias: | C9orf52 |
| Gene Description: | tetratricopeptide repeat domain 39B |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.482587 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
