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Difference between revisions of "TSS:Hg 100072.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=ENST00000506891.1:-10 BC070139:-10 AK301185:-12 AK298581:-16 AK091187:-47 KJ905020:59 LF206507:-117 MA442084:-117 LF355433:-126 MA591010:-126 AK298998:-133 BC142985:-137 ENST00000512701.6:-161 ENST00000380850.8:-161 ENST00000297615.9:-161 ENST00000505732.5:-161 NM_001168340:-161 NM_001168339:-161 NM_001168341:-161 NM_152574:-161 AK310482:-161
+
|all_trans=HGNC:23704
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.07
 
|cpg_percent=0.07
Line 22: Line 22:
 
|nearest_refseq=NM_152574
 
|nearest_refseq=NM_152574
 
|nearest_unigene=Hs.563630
 
|nearest_unigene=Hs.563630
|num_trans=21
+
|num_trans=158219
 
|species=human
 
|species=human
 
|start=15307183
 
|start=15307183

Latest revision as of 17:35, 19 July 2021

Basic information about the TSS


TSS ID:hg_100072.1
Species:human
Chr:chr9
TSS Classification:yes
Start:15307183
End:15307199
Strand:-
TSS Score:1
Start of the center position in the TSS region:15307191
End of the center position in the TSS region:15307192



Gene and protein annotation


Transcript_name:ENST00000506891.1 BC070139
Distance:-10
GeneID:158219
HGNC/MGI_ID:HGNC:23704
UniProt_ID:H0YAJ6
Gene_name:tetratricopeptide repeat domain 39B
Gene_symbol:TTC39B
Gene_synonyms:FLJ33868
Gene_source:HGNC:23704



Transcript annotation


Transcript_name:ENST00000506891.1 BC070139
Distance:-10
Num_trans:158219
All_trans:HGNC:23704



TATA-Box annotation


Distance to TSS:169
Nearest PromoterID:NM_152574
Entrez ID:158219
Nearest Unigene:Hs.563630
Nearest Refseq:NM_152574
Nearest Ensembl:ENSG00000155158
Gene Name:tetratricopeptide repeat domain 39B
Gene Alias:C9orf52
Gene Description:tetratricopeptide repeat domain 39B
Gene Type:protein-coding
CpG%:0.07
GC%:0.661692
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):