Difference between revisions of "TSS:Hg 100268.1"
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{{TSSDetail | {{TSSDetail | ||
| + | |CDK4I= | ||
| + | |CDKN2= | ||
|CDKN2B-AS= | |CDKN2B-AS= | ||
|CDKN2BAS= | |CDKN2BAS= | ||
| + | |CMM2= | ||
| + | |INK4= | ||
| + | |INK4A= | ||
| + | |MLM= | ||
| + | |MTS-1= | ||
| + | |MTS1= | ||
|NCRNA00089= | |NCRNA00089= | ||
| + | |P14= | ||
| + | |P14ARF= | ||
| + | |P16= | ||
| + | |P16-INK4A= | ||
| + | |P16INK4= | ||
| + | |P16INK4A= | ||
| + | |P19= | ||
| + | |P19ARF= | ||
|PCAT12= | |PCAT12= | ||
| − | |all_trans=ENST00000498628.6 | + | |TP16= |
| + | |all_trans=NM_001363763:0 ENST00000498628.6:3 ENST00000494262.5:35 ENST00000470819.2:431 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=-7 |
|end=21995359 | |end=21995359 | ||
|end_of_center_position=21995332 | |end_of_center_position=21995332 | ||
| − | |entrez_id= | + | |entrez_id=1029 |
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias= | + | |gene_alias=ARF{{!}}CDK4I{{!}}CDKN2{{!}}CMM2{{!}}INK4{{!}}INK4A{{!}}MLM{{!}}MTS-1{{!}}MTS1{{!}}P14{{!}}P14ARF{{!}}P16{{!}}P16-INK4A{{!}}P16INK4{{!}}P16INK4A{{!}}P19{{!}}P19ARF{{!}}TP16 |
| − | |gene_description= | + | |gene_description=cyclin dependent kinase inhibitor 2A |
|gene_id=1029 | |gene_id=1029 | ||
| − | |gene_name=cyclin | + | |gene_name=cyclin dependent kinase inhibitor 2A |
|gene_source=HGNC:1787 | |gene_source=HGNC:1787 | ||
|gene_symbol=CDKN2A | |gene_symbol=CDKN2A | ||
|gene_synonyms=ARF CDK4I CMM2 INK4 INK4a MTS1 p14 p14ARF p16 p16INK4a p19 p19Arf | |gene_synonyms=ARF CDK4I CMM2 INK4 INK4a MTS1 p14 p14ARF p16 p16INK4a p19 p19Arf | ||
| − | |gene_type= | + | |gene_type=protein-coding |
|hgnc_mgi_id=HGNC:1787 | |hgnc_mgi_id=HGNC:1787 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000147889 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001363763 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_000077 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.512599 |
| − | |num_trans= | + | |num_trans=4 |
|p15AS= | |p15AS= | ||
|species=human | |species=human | ||
| Line 32: | Line 49: | ||
|start_of_center_position=21995331 | |start_of_center_position=21995331 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001363763.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100268.1 | |tss_id=hg_100268.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 17:39, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 21995331 |
|---|---|
| End of the center position in the TSS region: | 21995332 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001363763.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | NM_001363763:0 ENST00000498628.6:3 ENST00000494262.5:35 ENST00000470819.2:431 |
TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NM_001363763 |
| Entrez ID: | 1029 |
| Nearest Unigene: | Hs.512599 |
| Nearest Refseq: | NM_000077 |
| Nearest Ensembl: | ENSG00000147889 |
| Gene Name: | cyclin dependent kinase inhibitor 2A |
| Gene Alias: | ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 |
| Gene Description: | cyclin dependent kinase inhibitor 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
