Difference between revisions of "TSS:Hg 100295.1"
From referenceTSS
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| Line 2: | Line 2: | ||
|HELN1= | |HELN1= | ||
|HUB= | |HUB= | ||
| − | |all_trans= | + | |all_trans=HGNC:3313 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=-100 | |distance=-100 | ||
| − | |distance_to_tss= | + | |distance_to_tss=278 |
|end=23825965 | |end=23825965 | ||
| + | |end_of_center_position=23825962 | ||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.39801 | |gc_percent=0.39801 | ||
| − | |gene_alias=HEL-N1 | + | |gene_alias=HEL-N1{{!}}HELN1{{!}}HUB |
|gene_description=ELAV like RNA binding protein 2 | |gene_description=ELAV like RNA binding protein 2 | ||
|gene_id=1993 | |gene_id=1993 | ||
| − | |gene_name=ELAV like | + | |gene_name=ELAV like RNA binding protein 2 |
|gene_source=HGNC:3313 | |gene_source=HGNC:3313 | ||
|gene_symbol=ELAVL2 | |gene_symbol=ELAVL2 | ||
| Line 20: | Line 21: | ||
|hgnc_mgi_id=HGNC:3313 | |hgnc_mgi_id=HGNC:3313 | ||
|nearest_ensembl=ENSG00000107105 | |nearest_ensembl=ENSG00000107105 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351467 |
|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
| − | |num_trans= | + | |num_trans=1993 |
|species=human | |species=human | ||
|start=23825958 | |start=23825958 | ||
| + | |start_of_center_position=23825961 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-82(GTCTTTTTAAAC,-,0.00),-80(CTTTTTAAACTC,+,0.00),23(TCTTTTAAGCCG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=AB209294 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100295.1 | |tss_id=hg_100295.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 17:40, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 23825961 |
|---|---|
| End of the center position in the TSS region: | 23825962 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB209294 |
|---|---|
| Distance: | -100 |
| Num_trans: | 1993 |
| All_trans: | HGNC:3313 |
TATA-Box annotation
| Distance to TSS: | 278 |
|---|---|
| Nearest PromoterID: | NM_001351467 |
| Entrez ID: | 1993 |
| Nearest Unigene: | Hs.166109 |
| Nearest Refseq: | NM_004432 |
| Nearest Ensembl: | ENSG00000107105 |
| Gene Name: | ELAV like RNA binding protein 2 |
| Gene Alias: | HEL-N1|HELN1|HUB |
| Gene Description: | ELAV like RNA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.39801 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -82(GTCTTTTTAAAC,-,0.00),-80(CTTTTTAAACTC,+,0.00),23(TCTTTTAAGCCG,+,0.00) |
