Difference between revisions of "TSS:Hg 100320.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=134 |entrez_id=80173 |gc_percent=0.711443 |gene_alias=BBS20|CCDC2|CMG-1|CMG1 |gene_description=intraflagellar transport 74 |gen...") |
|||
| (5 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |CCDC2= | ||
| + | |CMG-1= | ||
| + | |CMG1= | ||
| + | |NDMSBA= | ||
| + | |PLA2P= | ||
| + | |PLAP= | ||
| + | |all_trans=HGNC:9043 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| − | |distance_to_tss= | + | |distance=0 |
| − | |entrez_id= | + | |distance_to_tss=69 |
| + | |end=26947214 | ||
| + | |end_of_center_position=26947173 | ||
| + | |entrez_id=9373 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias= | + | |gene_alias=DOA1{{!}}NDMSBA{{!}}PLA2P{{!}}PLAP |
| − | | | + | |gene_description=phospholipase A2 activating protein |
| − | | | + | |gene_id=9373 |
| + | |gene_name=phospholipase A2 activating protein | ||
| + | |gene_source=HGNC:9043 | ||
| + | |gene_symbol=PLAA | ||
| + | |gene_synonyms=DOA1 FLJ11281 FLJ12699 PLA2P PLAP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |nearest_ensembl= | + | |hgnc_mgi_id=HGNC:9043 |
| − | |nearest_promoter_id= | + | |nearest_ensembl=ENSG00000137055 |
| − | |nearest_refseq= | + | |nearest_promoter_id=NM_001031689 |
| − | |nearest_unigene=Hs. | + | |nearest_refseq=NM_004253 |
| + | |nearest_unigene=Hs.27182 | ||
| + | |num_trans=9373 | ||
| + | |species=human | ||
| + | |start=26947131 | ||
| + | |start_of_center_position=26947172 | ||
| + | |strand=- | ||
| + | |transcript_name=BC032551 AK001642 AK022761 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100320.1 | |tss_id=hg_100320.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 17:40, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26947172 |
|---|---|
| End of the center position in the TSS region: | 26947173 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC032551 AK001642 AK022761 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9373 |
| All_trans: | HGNC:9043 |
TATA-Box annotation
| Distance to TSS: | 69 |
|---|---|
| Nearest PromoterID: | NM_001031689 |
| Entrez ID: | 9373 |
| Nearest Unigene: | Hs.27182 |
| Nearest Refseq: | NM_004253 |
| Nearest Ensembl: | ENSG00000137055 |
| Gene Name: | phospholipase A2 activating protein |
| Gene Alias: | DOA1|NDMSBA|PLA2P|PLAP |
| Gene Description: | phospholipase A2 activating protein |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
