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Difference between revisions of "TSS:Hg 100321.1"

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Line 3: Line 3:
 
|CMG-1=
 
|CMG-1=
 
|CMG1=
 
|CMG1=
|all_trans=ENST00000520884.5:0 uc003zqe.3:0 AF145020:0 AK002143:0 AK001642:50 AK022761:75 BC032551:82 AB385043:175 EU176453:176 EU176795:176 KJ898010:177 ENST00000397292.7:-191 uc003zqd.4:-191 AL133608:-191 NM_001031689:-198 ENST00000523212.1:240 uc064slw.1:240
+
|NDMSBA=
 +
|PLA2P=
 +
|PLAP=
 +
|all_trans=HGNC:9043
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.105
 
|cpg_percent=0.105
 
|distance=0
 
|distance=0
|distance_to_tss=-65
+
|distance_to_tss=-5
 
|end=26947272
 
|end=26947272
 
|end_of_center_position=26947248
 
|end_of_center_position=26947248
|entrez_id=80173
+
|entrez_id=9373
 
|gc_percent=0.681592
 
|gc_percent=0.681592
|gene_alias=BBS20
+
|gene_alias=DOA1{{!}}NDMSBA{{!}}PLA2P{{!}}PLAP
|gene_description=intraflagellar transport 74
+
|gene_description=phospholipase A2 activating protein
 
|gene_id=9373
 
|gene_id=9373
 
|gene_name=phospholipase A2 activating protein
 
|gene_name=phospholipase A2 activating protein
Line 21: Line 24:
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 
|hgnc_mgi_id=HGNC:9043
 
|hgnc_mgi_id=HGNC:9043
|nearest_ensembl=ENSG00000096872
+
|nearest_ensembl=ENSG00000137055
|nearest_promoter_id=NM_001099222
+
|nearest_promoter_id=NM_001031689
|nearest_refseq=NM_025103
+
|nearest_refseq=NM_004253
|nearest_unigene=Hs.145402
+
|nearest_unigene=Hs.27182
|num_trans=17
+
|num_trans=9373
 
|species=human
 
|species=human
 
|start=26947222
 
|start=26947222
 
|start_of_center_position=26947247
 
|start_of_center_position=26947247
 
|strand=-
 
|strand=-
|transcript_name=ENST00000520884.5 uc003zqe.3 AF145020 AK002143
+
|transcript_name=ENST00000397292.8 ENST00000520884.5 AF145020 AK002143
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_100321.1
 
|tss_id=hg_100321.1
 
|tss_score=1
 
|tss_score=1
|uniprot_id=E5RIM3
+
|uniprot_id=E5RIM3 Q9Y263
 
}}
 
}}

Latest revision as of 17:40, 19 July 2021

Basic information about the TSS


TSS ID:hg_100321.1
Species:human
Chr:chr9
TSS Classification:yes
Start:26947222
End:26947272
Strand:-
TSS Score:1
Start of the center position in the TSS region:26947247
End of the center position in the TSS region:26947248



Gene and protein annotation


Transcript_name:ENST00000397292.8 ENST00000520884.5 AF145020 AK002143
Distance:0
GeneID:9373
HGNC/MGI_ID:HGNC:9043
UniProt_ID:E5RIM3 Q9Y263
Gene_name:phospholipase A2 activating protein
Gene_symbol:PLAA
Gene_synonyms:DOA1 FLJ11281 FLJ12699 PLA2P PLAP
Gene_source:HGNC:9043



Transcript annotation


Transcript_name:ENST00000397292.8 ENST00000520884.5 AF145020 AK002143
Distance:0
Num_trans:9373
All_trans:HGNC:9043



TATA-Box annotation


Distance to TSS:-5
Nearest PromoterID:NM_001031689
Entrez ID:9373
Nearest Unigene:Hs.27182
Nearest Refseq:NM_004253
Nearest Ensembl:ENSG00000137055
Gene Name:phospholipase A2 activating protein
Gene Alias:DOA1|NDMSBA|PLA2P|PLAP
Gene Description:phospholipase A2 activating protein
Gene Type:protein-coding
CpG%:0.105
GC%:0.681592
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):