Difference between revisions of "TSS:Hg 100388.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |RIG1= | ||
|RIGI= | |RIGI= | ||
|RLR-1= | |RLR-1= | ||
|SGMRT2= | |SGMRT2= | ||
| − | |all_trans= | + | |all_trans=HGNC:19102 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-29 |
|end=32526263 | |end=32526263 | ||
|end_of_center_position=32526225 | |end_of_center_position=32526225 | ||
|entrez_id=23586 | |entrez_id=23586 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| − | |gene_alias=RIG-I | + | |gene_alias=RIG-I{{!}}RIG1{{!}}RIGI{{!}}RLR-1{{!}}SGMRT2 |
|gene_description=DExD/H-box helicase 58 | |gene_description=DExD/H-box helicase 58 | ||
|gene_id=23586 | |gene_id=23586 | ||
| − | |gene_name= | + | |gene_name=DExD/H-box helicase 58 |
|gene_source=HGNC:19102 | |gene_source=HGNC:19102 | ||
|gene_symbol=DDX58 | |gene_symbol=DDX58 | ||
| − | |gene_synonyms=DKFZp434J1111 FLJ13599 RIG-I | + | |gene_synonyms=DKFZp434J1111 FLJ13599 RIG-1 RIG-I RIG1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:19102 | |hgnc_mgi_id=HGNC:19102 | ||
| Line 25: | Line 26: | ||
|nearest_refseq=NM_014314 | |nearest_refseq=NM_014314 | ||
|nearest_unigene=Hs.190622 | |nearest_unigene=Hs.190622 | ||
| − | |num_trans= | + | |num_trans=23586 |
|species=human | |species=human | ||
|start=32526186 | |start=32526186 | ||
|start_of_center_position=32526224 | |start_of_center_position=32526224 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-4(CGGCTTTAAAGC,-,0.00) |
| − | |transcript_name=ENST00000379868. | + | |transcript_name=ENST00000379883.3 ENST00000379868.6 ENST00000679771.1 ENST00000680733.1 ENST00000679859.1 BC070029 AK315040 AK301678 BX647917 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100388.1 | |tss_id=hg_100388.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A2A376 B4DWT9 | + | |uniprot_id=A2A376 B4DWT9 O95786 |
}} | }} | ||
Latest revision as of 17:42, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32526224 |
|---|---|
| End of the center position in the TSS region: | 32526225 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000379883.3 ENST00000379868.6 ENST00000679771.1 ENST00000680733.1 ENST00000679859.1 BC070029 AK315040 AK301678 BX647917 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23586 |
| All_trans: | HGNC:19102 |
TATA-Box annotation
| Distance to TSS: | -29 |
|---|---|
| Nearest PromoterID: | NM_014314 |
| Entrez ID: | 23586 |
| Nearest Unigene: | Hs.190622 |
| Nearest Refseq: | NM_014314 |
| Nearest Ensembl: | ENSG00000107201 |
| Gene Name: | DExD/H-box helicase 58 |
| Gene Alias: | RIG-I|RIG1|RIGI|RLR-1|SGMRT2 |
| Gene Description: | DExD/H-box helicase 58 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -4(CGGCTTTAAAGC,-,0.00) |
